miRBase entry: dme-mir-4972

Stem-loop dme-mir-4972


Accession
MI0017758
Description
Drosophila melanogaster dme-mir-4972 precursor miRNA

Literature search
1 open access papers mention dme-mir-4972
(1 sentences)

Sequence

40 reads, 8 reads per million, 24 experiments
aaucaaaagcgccguaggccuccaCCUCGGCUUUACAGAUAUAUAUauauauaucguguaUAUAUCUGUGCGAUCGGGAUUGagacugagguugguccgaguacuuu
.....((((.((((..((((...(((((((((((((((((((((((((.......)))))))))))))))...........))).))))))).)))))).)).))))

Structure
aauca    c  -  ua    ucc       -   -----------               au 
     aaag gc cg  ggcc   aCCUCGG CUU           UACAGAUAUAUAUau  a
     |||| || ||  ||||   ||||||| |||           |||||||||||||||  u
     uuuc ug gc  cugg   uggaguc gaG           GUGUCUAUAUaugug  a
-----    a  a  --    --u       a   UUAGGGCUAGC               cu 


Annotation confidence Not enough data
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Genome context
chr2L: 3636967-3637073 [-]

Database links

Mature dme-miR-4972-5p

Accession MIMAT0020199
Description Drosophila melanogaster dme-miR-4972-5p mature miRNA
Sequence 25 - CCUCGGCUUUACAGAUAUAUAU - 46
Evidence experimental
Illumina [1]

Mature dme-miR-4972-3p

Accession MIMAT0020200
Description Drosophila melanogaster dme-miR-4972-3p mature miRNA
Sequence 61 - UAUAUCUGUGCGAUCGGGAUUG - 82
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21177969
    Deep annotation of Drosophila melanogaster microRNAs yields insights into their processing, modification, and emergence
    "Berezikov E, Robine N, Samsonova A, Westholm JO, Naqvi A, Hung JH, Okamura K, Dai Q, Bortolamiol-Becet D, Martin R, Zhao Y, Zamore PD, Hannon GJ, Marra MA, Weng Z, Perrimon N, Lai EC"
    "Genome Res (2011) 21:203-215