Stem-loop sequence egr-mir-2c

Accession

MI0017778 (change log)

Description

Echinococcus granulosus miR-2c stem-loop

Gene family

MIPF0000049; mir-2

Literature search

1 open access papers mention egr-mir-2c
(2 sentences)

Stem-loop

         ug     -      c    c    a    -  g 
5' gggcgu  uucgu cgucaa auug cugu gaca cg g
   ||||||  ||||| |||||| |||| |||| |||| || u
3' ucugcg  gagca guaguu uaac gaca cugu gc u
         gu     a      a    c    -    a  g 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (ASM52419v1; GCA_000524195.1): APAU02000027.1: 925649-925726 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from egr-mir-2c

• egr-mir-71: APAU02000027.1: 925546-925631 [+]
• egr-mir-2c: APAU02000027.1: 925649-925726 [+]
• egr-mir-2d: APAU02000027.1: 925654-925717 [-]
• egr-mir-2b: APAU02000027.1: 925755-925830 [+]

Database links

• miRBase Tracker:MI0017778

Mature sequence egr-miR-2c-5p

• Accession: MIMAT0020231
• Previous IDs: egr-miR-2c*
• Sequence: 13 - ucgucaacauugccuguagaca - 34
• Evidence: experimental; cloned [1], Illumina [2]

Mature sequence egr-miR-2c-3p

• Accession: MIMAT0020232
• Previous IDs: egr-miR-2c
• Sequence: 47 - ucacagccaauauugaugaa - 66
• Evidence: experimental; cloned [1], Illumina [2]

References

1. PMID:21219906 "Identification of Echinococcus granulosus microRNAs and their expression in different life cycle stages and parasite genotypes" Cucher M, Prada L, Mourglia-Ettlin G, Dematteis S, Camicia F, Asurmendi S, Rosenzvit M Int J Parasitol. 41:439-448(2011).
2. PMID:25656283 "microRNA profiling in the zoonotic parasite Echinococcus canadensis using a high-throughput approach" Macchiaroli N, Cucher M, Zarowiecki M, Maldonado L, Kamenetzky L, Rosenzvit MC Parasit Vectors. 8:83(2015).