Stem-loop egr-mir-71

Accession

MI0017783

Description

Echinococcus granulosus egr-mir-71 precursor miRNA

Gene family

MIPF0000278; mir-71

Literature search

2 open access papers mention egr-mir-71
(13 sentences)

Sequence

uuggcagucaucucgUGAAAGACGAUGGUAGUGAGAuacagaggaaucgagcaUCUUGCUACUCCGUCUUUUCCUaagaugcugcu
..(((((.(((((...((((((((..(((((((((((.(.((....))..).))))))))))).))))))))....))))))))))

Structure

uu     u     -cgU        AU           a -a  g 
  ggcag caucu    GAAAGACG  GGUAGUGAGAu c  ga g
  ||||| |||||    ||||||||  ||||||||||| |  ||  
  ucguc guaga    UUUUCUGC  UCAUCGUUCUa g  cu a
--     -     aUCC        -C           c ag  a 

Annotation confidence Not enough data

Genome context

APAU02000027.1: 925546-925631 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from egr-mir-71

Mature egr-miR-71-5p

• Accession: MIMAT0020237
• Description: Echinococcus granulosus egr-miR-71-5p mature miRNA
• Sequence: 16 - UGAAAGACGAUGGUAGUGAGA - 36
• Evidence: experimental ; cloned [1], Illumina [2]

Mature egr-miR-71-3p

• Accession: MIMAT0037425
• Description: Echinococcus granulosus egr-miR-71-3p mature miRNA
• Sequence: 54 - UCUUGCUACUCCGUCUUUUCCU - 75
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 21219906
   Identification of Echinococcus granulosus microRNAs and their expression in different life cycle stages and parasite genotypes
   "Cucher M, Prada L, Mourglia-Ettlin G, Dematteis S, Camicia F, Asurmendi S, Rosenzvit M"
   "Int J Parasitol (2011) 41:439-448


2. PubMed ID: 25656283
   microRNA profiling in the zoonotic parasite Echinococcus canadensis using a high-throughput approach
   Macchiaroli N, Cucher M, Zarowiecki M, Maldonado L, Kamenetzky L, Rosenzvit MC
   Parasit Vectors (2015) 8:83