Stem-loop sequence egr-mir-71

Accession

MI0017783 (change log)

Description

Echinococcus granulosus miR-71 stem-loop

Gene family

MIPF0000278; mir-71

Literature search

2 open access papers mention egr-mir-71
(13 sentences)

Stem-loop

   uu     u     -c ug       au     ug    a -a  g 
5'   ggcag caucu  g  aaagacg  gguag  agau c  ga g
     ||||| |||||  |  |||||||  |||||  |||| |  ||  
3'   ucguc guaga  c  uuucugc  ucauc  ucua g  cu a
   --     -     au cu       -c     gu    c ag  a 

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (ASM52419v1; GCA_000524195.1): APAU02000027.1: 925546-925631 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from egr-mir-71

• egr-mir-71: APAU02000027.1: 925546-925631 [+]
• egr-mir-2c: APAU02000027.1: 925649-925726 [+]
• egr-mir-2d: APAU02000027.1: 925654-925717 [-]
• egr-mir-2b: APAU02000027.1: 925755-925830 [+]

Database links

• miRBase Tracker:MI0017783

Mature sequence egr-miR-71-5p

• Accession: MIMAT0020237
• Sequence: 16 - ugaaagacgaugguagugaga - 36
• Evidence: experimental; cloned [1], Illumina [2]

Mature sequence egr-miR-71-3p

• Accession: MIMAT0037425
• Sequence: 54 - ucuugcuacuccgucuuuuccu - 75
• Evidence: experimental; Illumina [2]

References

1. PMID:21219906 "Identification of Echinococcus granulosus microRNAs and their expression in different life cycle stages and parasite genotypes" Cucher M, Prada L, Mourglia-Ettlin G, Dematteis S, Camicia F, Asurmendi S, Rosenzvit M Int J Parasitol. 41:439-448(2011).
2. PMID:25656283 "microRNA profiling in the zoonotic parasite Echinococcus canadensis using a high-throughput approach" Macchiaroli N, Cucher M, Zarowiecki M, Maldonado L, Kamenetzky L, Rosenzvit MC Parasit Vectors. 8:83(2015).