Stem-loop sequence egr-mir-4989

Accession

MI0017794 (change log)

Description

Echinococcus granulosus miR-4989 stem-loop

Gene family

MIPF0001239; mir-4989

Literature search

2 open access papers mention egr-mir-4989
(10 sentences)

Stem-loop

   acg  -       c u       c   a  ------     aa 
5'    cu ggguagu g ugcauuu cac cu      gcugc  g
      || ||||||| | ||||||| ||| ||      |||||   
3'    ga ucuauca c acguaaa gug ga      cgacg  g
   -ua  g       a c       a   g  gaaagu     au 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (ASM52419v1; GCA_000524195.1): APAU02000001.1: 2377189-2377268 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from egr-mir-4989

• egr-mir-4989: APAU02000001.1: 2377189-2377268 [+]
• egr-mir-277a: APAU02000001.1: 2377325-2377403 [+]

Database links

• miRBase Tracker:MI0017794

Mature sequence egr-miR-4989-5p

• Accession: MIMAT0037433
• Sequence: 5 - uggguagucguugcauuucc - 24
• Evidence: experimental; Illumina [2]

Mature sequence egr-miR-4989-3p

• Accession: MIMAT0020250
• Sequence: 58 - aaaaugcaccaacuaucugaga - 79
• Evidence: experimental; cloned [1], Illumina [2]

References

1. PMID:21219906 "Identification of Echinococcus granulosus microRNAs and their expression in different life cycle stages and parasite genotypes" Cucher M, Prada L, Mourglia-Ettlin G, Dematteis S, Camicia F, Asurmendi S, Rosenzvit M Int J Parasitol. 41:439-448(2011).
2. PMID:25656283 "microRNA profiling in the zoonotic parasite Echinococcus canadensis using a high-throughput approach" Macchiaroli N, Cucher M, Zarowiecki M, Maldonado L, Kamenetzky L, Rosenzvit MC Parasit Vectors. 8:83(2015).