Stem-loop sequence egr-mir-4989

AccessionMI0017794 (change log)
DescriptionEchinococcus granulosus miR-4989 stem-loop
Gene family MIPF0001239; mir-4989
Literature search

2 open access papers mention egr-mir-4989
(10 sentences)

   acg  -       c u       c   a  ------     aa 
5'    cu ggguagu g ugcauuu cac cu      gcugc  g
      || ||||||| | ||||||| ||| ||      |||||   
3'    ga ucuauca c acguaaa gug ga      cgacg  g
   -ua  g       a c       a   g  gaaagu     au 
Get sequence
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (ASM52419v1; GCA_000524195.1) Overlapping transcripts
APAU02000001.1: 2377189-2377268 [+]
Clustered miRNAs
< 10kb from egr-mir-4989
egr-mir-4989APAU02000001.1: 2377189-2377268 [+]
egr-mir-277aAPAU02000001.1: 2377325-2377403 [+]
Database links

Mature sequence egr-miR-4989-5p

Accession MIMAT0037433

5 - 


 - 24

Get sequence
Evidence experimental; Illumina [2]

Mature sequence egr-miR-4989-3p

Accession MIMAT0020250

58 - 


 - 79

Get sequence
Evidence experimental; cloned [1], Illumina [2]


PMID:21219906 "Identification of Echinococcus granulosus microRNAs and their expression in different life cycle stages and parasite genotypes" Cucher M, Prada L, Mourglia-Ettlin G, Dematteis S, Camicia F, Asurmendi S, Rosenzvit M Int J Parasitol. 41:439-448(2011).
PMID:25656283 "microRNA profiling in the zoonotic parasite Echinococcus canadensis using a high-throughput approach" Macchiaroli N, Cucher M, Zarowiecki M, Maldonado L, Kamenetzky L, Rosenzvit MC Parasit Vectors. 8:83(2015).