miRBase entry: egr-mir-4989

Stem-loop egr-mir-4989


Accession
MI0017794
Description
Echinococcus granulosus egr-mir-4989 precursor miRNA
Gene family
MIPF0001239; mir-4989

Literature search
2 open access papers mention egr-mir-4989
(10 sentences)

Sequence

acgcUGGGUAGUCGUUGCAUUUCCacacugcugcaagguagcagcugaaagagggugAAAAUGCACCAACUAUCUGAGAu
...(((((((((.(.(((((((.(((.(((((((......)))))......)).))).))))))).).))))))).))..

Structure
acg  -       C U       C   a  ------     aa 
   cU GGGUAGU G UGCAUUU Cac cu      gcugc  g
   || ||||||| | ||||||| ||| ||      |||||   
   GA UCUAUCA C ACGUAAA gug ga      cgacg  g
-uA  G       A C       A   g  gaaagu     au 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
APAU02000001.1: 2377189-2377268 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from egr-mir-4989
Name Accession Chromosome Start End Strand Confidence




Database links

Mature egr-miR-4989-3p

Accession MIMAT0020250
Description Echinococcus granulosus egr-miR-4989-3p mature miRNA
Sequence 58 - AAAAUGCACCAACUAUCUGAGA - 79
Evidence experimental
cloned [1], Illumina [2]

Mature egr-miR-4989-5p

Accession MIMAT0037433
Description Echinococcus granulosus egr-miR-4989-5p mature miRNA
Sequence 5 - UGGGUAGUCGUUGCAUUUCC - 24
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 21219906
    Identification of Echinococcus granulosus microRNAs and their expression in different life cycle stages and parasite genotypes
    "Cucher M, Prada L, Mourglia-Ettlin G, Dematteis S, Camicia F, Asurmendi S, Rosenzvit M"
    "Int J Parasitol (2011) 41:439-448

  2. PubMed ID: 25656283
    microRNA profiling in the zoonotic parasite Echinococcus canadensis using a high-throughput approach
    Macchiaroli N, Cucher M, Zarowiecki M, Maldonado L, Kamenetzky L, Rosenzvit MC
    Parasit Vectors (2015) 8:83