Stem-loop gma-MIR166c

Accession

MI0017829

Description

Glycine max gma-MIR166c precursor miRNA

Gene family

MIPF0000004; MIR166

Literature search

36 open access papers mention gma-MIR166c
(210 sentences)

Sequence

gcuuuguguuuugaggGGAAUGUUGUCUGGCUCGAGGacccuucuucuucuugaucuuguguagacugcuauaccuguggucaaggaaugcuuaguguuuUCGGACCAGGCUUCAUUCCCCccaauuaua
..........(((.((((((((..((((((.((((((((.((.....(((((((((..((((((....))))))....)))))))))......)).)))))))).))))))..)))))))).))).....

Structure

gcuuuguguu   a        UU      C        c  -ucuuc         --uu      a 
          uug ggGGAAUG  GUCUGG UCGAGGac cu      uucuugauc    guguag c
          ||| ||||||||  |||||| |||||||| ||      |||||||||    ||||||  
          aac CCCCUUAC  CGGACC GGCUuuug ga      aggaacugg    cauauc u
-----auauu   c        UU      A        u  uucgua         uguc      g 

Annotation confidence Not enough data

Genome context

chr7: 4502830-4502959 [-]

Mature gma-miR166c-3p

• Accession: MIMAT0020978
• Description: Glycine max gma-miR166c-3p mature miRNA
• Sequence: 101 - UCGGACCAGGCUUCAUUCCCC - 121
• Evidence: experimental ; 454 [1], Illumina [2]

Mature gma-miR166c-5p

• Accession: MIMAT0022980
• Description: Glycine max gma-miR166c-5p mature miRNA
• Sequence: 17 - GGAAUGUUGUCUGGCUCGAGG - 37
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 21504877
   MicroRNAs in the shoot apical meristem of soybean
   "Wong CE, Zhao YT, Wang XJ, Croft L, Wang ZH, Haerizadeh F, Mattick JS, Singh MB, Carroll BJ, Bhalla PL"
   "J Exp Bot (2011) 62:2495-2506


2. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553