miRBase entry: gma-MIR168b

Stem-loop gma-MIR168b


Accession
MI0017835
Description
Glycine max gma-MIR168b precursor miRNA
Gene family
MIPF0000081; MIR168

Literature search
23 open access papers mention gma-MIR168b
(86 sentences)

Sequence

cggucucuaauUCGCUUGGUGCAGGUCGGGaaccgguuuucgcgcggaauggaggaacggucgccggcggcgaauuggaucccgccuugcaucaacugaaucggaggccg
((((((((.(((((.((((((((((.(((((.(((((((((((.(((..((......))....))))))).))))))).))))).)))))))))).))))).))))))))

Structure
        a     C          U     a       -    g   --aa  ga 
cggucucu auUCG UUGGUGCAGG CGGGa ccgguuu ucgc cgg    ug  g
|||||||| ||||| |||||||||| ||||| ||||||| |||| |||    ||   
gccggagg uaagu aacuacguuc gcccu gguuaag ggcg gcc    gc  g
        c     c          c     a       c    -   gcug  aa 


Annotation confidence Not enough data
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Genome context
chr1: 48944581-48944690 [-]

Database links

Mature gma-miR168b

Accession MIMAT0020985
Description Glycine max gma-miR168b mature miRNA
Sequence 12 - UCGCUUGGUGCAGGUCGGG - 30
Evidence experimental
454 [1], Illumina [2-3]

References

  1. PubMed ID: 21663675
    Identification of novel soybean microRNAs involved in abiotic and biotic stresses
    Kulcheski FR, de Oliveira LF, Molina LG, Almerão MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimarães FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R
    BMC Genomics (2011) 12:307

  2. PubMed ID: 21504877
    MicroRNAs in the shoot apical meristem of soybean
    "Wong CE, Zhao YT, Wang XJ, Croft L, Wang ZH, Haerizadeh F, Mattick JS, Singh MB, Carroll BJ, Bhalla PL"
    "J Exp Bot (2011) 62:2495-2506

  3. PubMed ID: 24475082
    Systems and evolutionary characterization of microRNAs and their underlying regulatory networks in soybean cotyledons
    Goettel W, Liu Z, Xia J, Zhang W, Zhao PX, An YQ
    PLoS One (2014) 9:e86153