miRBase entry: hsa-mir-5000

Stem-loop hsa-mir-5000


Accession
MI0017866
Symbol
HGNC: MIR5000
Description
Homo sapiens hsa-mir-5000 precursor miRNA


Sequence

158 reads, 1087 reads per million, 32 experiments
cugaagaguagagugugugguccCAGUUCAGAAGUGUUCCUGAGUaacuugugcuuauaacUCAGGACACUUCUGAACUUGGAccauacaggucucccugcuu
.....((((((((((((((((((.(((((((((((((.(((((((..............)))))))))))))))))))).))))))))))...)))..)))))

Structure
cugaa     --   ---          C             U       aacuug 
     gagua  gag   uguguggucc AGUUCAGAAGUGU CCUGAGU      u
     |||||  |||   |||||||||| ||||||||||||| |||||||       
     uucgu  cuc   acauaccAGG UCAAGUCUUCACA GGACUca      g
-----     cc   ugg          U             -       auauuc 


Annotation confidence High
Do you think this miRNA is real?

Genome context
chr2: 75090812-75090914 [+]

Disease association
hsa-mir-5000 is associated with one or more human diseases in the Human microRNA Disease Database
Disease Description Category PubMed ID


Database links

Mature hsa-miR-5000-5p

Accession MIMAT0021019
Description Homo sapiens hsa-miR-5000-5p mature miRNA
Sequence 24 - CAGUUCAGAAGUGUUCCUGAGU - 45
Evidence experimental
Illumina [2]

Mature hsa-miR-5000-3p

Accession MIMAT0021020
Description Homo sapiens hsa-miR-5000-3p mature miRNA
Sequence 62 - UCAGGACACUUCUGAACUUGGA - 83
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 21606961
    Discovery of new microRNAs by small RNAome deep sequencing in childhood acute lymphoblastic leukemia
    "Schotte D, Akbari Moqadam F, Lange-Turenhout EA, Chen C, van Ijcken WF, Pieters R, den Boer ML"
    "Leukemia (2011) 25:1389-1399

  2. PubMed ID: 21558790
    Enhancing miRNA annotation confidence in miRBase by continuous cross dataset analysis
    "Hansen TB, Kjems J, Bramsen JB"
    "RNA Biol (2011) 8:378-383