miRBase entry: hsa-mir-548ap

Stem-loop hsa-mir-548ap


Accession
MI0017875
Symbol
HGNC: MIR548AP
Description
Homo sapiens hsa-mir-548ap precursor miRNA
Gene family
MIPF0000317; mir-548

Literature search
57 open access papers mention hsa-mir-548ap
(171 sentences)

Sequence

3288 reads, 107 reads per million, 77 experiments
accaauuccuagguuggugcAAAAGUAAUUGCGGUCUUUgucauuaaaaccaauaacAAAAACCACAAUUACUUUUuacugaccuaaagauuaauu
...((((..((((((((((.(((((((((((.(((.(((((.(((......))).))))).))).)))))))))))))))))))))..))))....

Structure
-acc    cc          c           C   C     c   aa 
    aauu  uagguuggug AAAAGUAAUUG GGU UUUgu auu  a
    ||||  |||||||||| ||||||||||| ||| ||||| |||   
    uuag  auccagucau UUUUCAUUAAC CCA AAAca uaa  a
uuaa    aa          -           A   A     a   cc 


Annotation confidence High
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Genome context
chr15: 85825635-85825730 [+]

Database links

Mature hsa-miR-548ap-5p

Accession MIMAT0021037
Description Homo sapiens hsa-miR-548ap-5p mature miRNA
Sequence 21 - AAAAGUAAUUGCGGUCUUU - 39
Evidence not_experimental

Mature hsa-miR-548ap-3p

Accession MIMAT0021038
Description Homo sapiens hsa-miR-548ap-3p mature miRNA
Sequence 58 - AAAAACCACAAUUACUUUU - 76
Evidence not_experimental

References

  1. PubMed ID: 21558790
    Enhancing miRNA annotation confidence in miRBase by continuous cross dataset analysis
    "Hansen TB, Kjems J, Bramsen JB"
    "RNA Biol (2011) 8:378-383