Stem-loop ath-MIR5012

Accession

MI0017880

Description

Arabidopsis thaliana ath-MIR5012 precursor miRNA

Sequence

auaaugauuggugaguuugaugaaaauggacuguggaggaaaacaaauagcagucaaacaccgauuagaacaccacuuacguacgucuucuaaucgauaUUUUACUGCUACUUGUGUUCCucaagaguacuucaaacucacaucauuau
((((((((..((((((((((.......(((((.(.((((((.((((.(((((((.(((...(((((((((.((.((....))..)).)))))))))...))).))))))).)))).)))))).).))).))))))))))))))))))))

Structure

        ug          ugaaaau  -   g g      a    a       c   cac         c  -c  u 
auaaugau  gugaguuuga       gg acu u gaggaa acaa uagcagu aaa   cgauuagaa ac  ac u
||||||||  ||||||||||       || ||| | |||||| |||| ||||||| |||   ||||||||| ||  ||  
uauuacua  cacucaaacu       uc uga a cuCCUU UGUU AUCGUCA UUU   gcuaaucuu ug  ug a
        --          -------  a   g a      G    C       U   aua         c  ca  c 

Annotation confidence Not enough data

Genome context

chr2: 8432648-8432796 [+]

Mature ath-miR5012

• Accession: MIMAT0020516
• Description: Arabidopsis thaliana ath-miR5012 mature miRNA
• Sequence: 100 - UUUUACUGCUACUUGUGUUCC - 120
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21357774
   MicroRNA activity in the Arabidopsis male germline
   "Borges F, Pereira PA, Slotkin RK, Martienssen RA, Becker JD"
   "J Exp Bot (2011) 62:1611-1620