Stem-loop ath-MIR5027

Accession

MI0017897

Description

Arabidopsis thaliana ath-MIR5027 precursor miRNA

Sequence

ucaauuuagauaugugagaaaACCGGUUGGAACUUGCCUUAAccaagaaaagcuacaaaauauuuuuuuucugacaaaaaaaagaaaaagaaaaucgauuuugugguuuucuugguuaagccagguucaaaccgauuuacaugcauguguuggauguguga
...(((((((((((((.(.(((.(((((.(((((((.((((((((((((((.(((((((((.((((((((((..........)))))))))).....))))))))))))))))))))))).))))))).))))).))).).))))))).))))))......

Structure

---uca      -       a a   C     G       C              g         ----a          gaca 
      auuuag auaugug g aaA CGGUU GAACUUG CUUAAccaagaaaa cuacaaaau     uuuuuuuucu    a
      |||||| ||||||| | ||| ||||| ||||||| |||||||||||||| |||||||||     ||||||||||     
      uagguu uguacgu c uuu gccaa cuuggac gaauugguucuuuu gguguuuua     aagaaaaaga    a
agugug      g       a a   a     a       c              -         gcuaa          aaaa 

Annotation confidence Not enough data

Genome context

chr5: 10943902-10944062 [+]

Mature ath-miR5027

• Accession: MIMAT0020533
• Description: Arabidopsis thaliana ath-miR5027 mature miRNA
• Sequence: 22 - ACCGGUUGGAACUUGCCUUAA - 42
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21357774
   MicroRNA activity in the Arabidopsis male germline
   "Borges F, Pereira PA, Slotkin RK, Martienssen RA, Becker JD"
   "J Exp Bot (2011) 62:1611-1620