miRBase entry: ath-MIR5029

Stem-loop ath-MIR5029


Accession
MI0017899
Description
Arabidopsis thaliana ath-MIR5029 precursor miRNA

Literature search
1 open access papers mention ath-MIR5029
(2 sentences)

Sequence

gaaugagaaugaugaugcaucuuauguaacgaucgggAAUGAGAGAGAACACUGCAAAuuagagauccaaauucaauggauggagaguaaucgauucagcuuggaucguaauugguaagagcauugauaagggguuaauuugcaguguucucucucauucccgaucguuugugcguuaucaugauuuauuu
(((((((.((((((((((((.......((((((((((((((((((((((((((((((((((...((((....(((((((((.((......)).)))).((((..((((....))))..)))))))))....)))))))))))))))))))))))))))))))))))))).))))))))))))..)))))))

Structure
       -a            cuuaugu                                  gag    aaau     ggauggagaguaaucgauuca    gg    u 
gaaugag  augaugaugcau       aacgaucgggAAUGAGAGAGAACACUGCAAAuua   aucc    ucaau                     gcuu  aucg a
|||||||  ||||||||||||       ||||||||||||||||||||||||||||||||||   ||||    |||||                     ||||  ||||  
uuuauuu  uacuauugcgug       uugcuagcccuuacucucucuugugacguuuaau   uggg    aguua                     cgag  uggu a
       ag            ------u                                  ---    gaau     ---------------------    aa    u 


Annotation confidence Not enough data
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Genome context
chr5: 12268507-12268697 [+]

Database links

Mature ath-miR5029

Accession MIMAT0020535
Description Arabidopsis thaliana ath-miR5029 mature miRNA
Sequence 38 - AAUGAGAGAGAACACUGCAAA - 58
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21357774
    MicroRNA activity in the Arabidopsis male germline
    "Borges F, Pereira PA, Slotkin RK, Martienssen RA, Becker JD"
    "J Exp Bot (2011) 62:1611-1620