Stem-loop sequence gma-MIR5037a

Accession

MI0017910 (change log)

Previous IDs

gma-MIR5037

Description

Glycine max miR5037 stem-loop

Gene family

MIPF0001288; MIR5037

Stem-loop

   aauaaacaaguuucuuauaggucuaugcaugaaguuguacauagagca       u     -    aa    u           a      uguc  uuua 
5'                                                 ugcuuuu agugg ccuc  aggc uccacuacugc uguuuc    gg    a
                                                   ||||||| ||||| ||||  |||| ||||||||||| ||||||    ||     
3'                                                 acggaaa uuacc ggag  uccg aggugaugaug acaaag    cc    u
   -----------------------------------------------a       -     u    -g    u           a      ---u  uaua 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Glycine_max_v2.0; GCA_000004515.3): chr8: 47688219-47688369 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from gma-MIR5037a

• gma-MIR5037d: chr8: 47682569-47682674 [+]
• gma-MIR5037a: chr8: 47688219-47688369 [+]

Database links

• miRBase Tracker:MI0017910

Mature sequence gma-miR5037a

• Accession: MIMAT0021060
• Previous IDs: gma-miR5037
• Sequence: 61 - gccucaaaggcuuccacuacug - 82
• Evidence: experimental; SOLiD [1]

References

1. PMID:21751852 "Transcriptional analysis of soybean root response to Fusarium virguliforme, the causal agent of sudden death syndrome" Radwan O, Liu Y, Clough SJ Mol Plant Microbe Interact. 24:958-972(2011).