Stem-loop gma-MIR1516b

Accession

MI0017911

Description

Glycine max gma-MIR1516b precursor miRNA

Gene family

MIPF0001353; MIR1516

Literature search

1 open access papers mention gma-MIR1516b
(1 sentences)

Sequence

gauuuguuuugaguauuugggugggguggaauauaacuauauaagucauaagugcuucugagAGCUUCUCUACAGAAAAUAUAcaacuuuuuuugguagagaaguuuugaaaagcucuuaaaagcauucuaccuuuguauccaaacagcgc
...((((((.(.((((..((((((((((.......(((.....)))..((((.((((.(.(((((((((((((((((((.........)))))).))))))))))))).).)))).))))....))))))))))..)))).)))))))...

Structure

gau      u a    uu          gaauauaacuauauaaguca    u    c g             -      UAU 
   uuguuu g guau  ggguggggug                    uaag gcuu u agAGCUUCUCUAC AGAAAA   A
   |||||| | ||||  ||||||||||                    |||| |||| | ||||||||||||| ||||||   c
   gacaaa c uaug  uccaucuuac                    auuc cgaa a uuuugaagagaug uuuuuu   a
cgc      - c    uu          ----------------gaaa    u    a g             g      uca 

Annotation confidence Not enough data

Genome context

chr9: 2548521-2548671 [-]

Mature gma-miR1516b

• Accession: MIMAT0021061
• Description: Glycine max gma-miR1516b mature miRNA
• Sequence: 63 - AGCUUCUCUACAGAAAAUAUA - 83
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21751852
   Transcriptional analysis of soybean root response to Fusarium virguliforme, the causal agent of sudden death syndrome
   "Radwan O, Liu Y, Clough SJ"
   "Mol Plant Microbe Interact (2011) 24:958-972