Stem-loop gma-MIR1521b

Accession

MI0017915

Description

Glycine max gma-MIR1521b precursor miRNA

Literature search

1 open access papers mention gma-MIR1521b
(1 sentences)

Sequence

ccaauaggauuaugacauuuggcagucaacauuuuccauuaacagucaaugaguaaugauGACUGUCACGUGUCAUAAUCAUAuuggacauuaauuuucguacaccauuuuaacauccaauaagauuaugauacauggcuguuaacguuuu
......(((..(((((........))))...)..))).................((((.((((.((((.(((((((((((.(((((((..((((...............))))..))))))).))))))))))).)))).)))).))))..

Structure

ccaauaggauuaugacauuuggcagucaacauuuuccauuaacagucaaugagu    a    U    C           A       ca    uuuucg 
                                                      aaug uGAC GUCA GUGUCAUAAUC UAuugga  uuaa      u
                                                      |||| |||| |||| ||||||||||| |||||||  ||||      a
                                                      uugc auug cggu cauaguauuag auaaccu  aauu      c
----------------------------------------------------uu    a    u    a           a       ac    uuacca 

Annotation confidence Not enough data

Genome context

chr11: 12131454-12131604 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from gma-MIR1521b

Mature gma-miR1521b

• Accession: MIMAT0021065
• Description: Glycine max gma-miR1521b mature miRNA
• Sequence: 61 - GACUGUCACGUGUCAUAAUCAUA - 83
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21751852
   Transcriptional analysis of soybean root response to Fusarium virguliforme, the causal agent of sudden death syndrome
   "Radwan O, Liu Y, Clough SJ"
   "Mol Plant Microbe Interact (2011) 24:958-972