miRBase entry: gma-MIR5042

Stem-loop gma-MIR5042


Accession
MI0017922
Description
Glycine max gma-MIR5042 precursor miRNA


Sequence

aaagaugcaaaauuuucaaguguucaaguguugacaacuauuuuuagcuuucaaacccccUAUCUUGGAUCACAGCCCCAUUgccuaucauggggcuuggagUGGGGCUUGAUCCAAGAUAGGaagcuggaaagcuugaaaguaugaacug
...........((((((((((.....(((.......))).((((((((((........((((((((((((((.(((((((((((((......))))....)))))))))))))))))))))))))))))))))))))))))))........

Structure
aaagaugcaaa          guucaaguguugacaacua          ucaaaccc              C         ----    au 
           auuuucaagu                   uuuuuagcuu        ccUAUCUUGGAUCA AGCCCCAUU    gccu  c
           ||||||||||                   ||||||||||        |||||||||||||| |||||||||    ||||   
           ugaaaguucg                   aaaggucgaa        GGAUAGAACCUAGU UCGGGGUga    cggg  a
---gucaagua          -------------------          --------              -         gguu    gu 


Annotation confidence Not enough data
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Genome context
chr18: 10449468-10449618 [+]

Database links

Mature gma-miR5042-5p

Accession MIMAT0021072
Description Glycine max gma-miR5042-5p mature miRNA
Sequence 61 - UAUCUUGGAUCACAGCCCCAUU - 82
Evidence experimental
SOLiD [1]

Mature gma-miR5042-3p

Accession MIMAT0032123
Description Glycine max gma-miR5042-3p mature miRNA
Sequence 103 - UGGGGCUUGAUCCAAGAUAGG - 123
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 21751852
    Transcriptional analysis of soybean root response to Fusarium virguliforme, the causal agent of sudden death syndrome
    "Radwan O, Liu Y, Clough SJ"
    "Mol Plant Microbe Interact (2011) 24:958-972

  2. PubMed ID: 24475082
    Systems and evolutionary characterization of microRNAs and their underlying regulatory networks in soybean cotyledons
    Goettel W, Liu Z, Xia J, Zhang W, Zhao PX, An YQ
    PLoS One (2014) 9:e86153