miRBase entry: bdi-MIR408

Stem-loop bdi-MIR408


Accession
MI0017941
Description
Brachypodium distachyon bdi-MIR408 precursor miRNA
Gene family
MIPF0000102; MIR408


Sequence

ggggaggagaCAGGGAUGGAGCAGAGCAUGGgauggggcuaacagcaaaauuacguucguuauuacuuccacuauaugcugugagagcugcugcugcuguguuguugcucccucccCUGCACUGCCUCUUCCCUGGCuccccugc
.(((.((((.((((((.(((((((.(((.((((.(((((.(((((((......................(((........)))(((((....))).)).)))))))))))).)))).))).))).)))))))))).)))))))..

Structure
-g   a    a      U    -   A   U    u     u       aaauuacguucguuauuacuuccacuauaugcugug  -   u 
  ggg ggag CAGGGA GGAG CAG GCA GGga ggggc aacagca                                    ag agc g
  ||| |||| |||||| |||| ||| ||| |||| ||||| |||||||                                    || |||  
  ucc ccuC GUCCCU UCUC GUC CGU cccu ccucg uuguugu                                    uc ucg c
cg   -    G      -    C   A   C    c     -       -----------------------------------g  g   u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature bdi-miR408-5p

Accession MIMAT0020550
Description Brachypodium distachyon bdi-miR408-5p mature miRNA
Sequence 11 - CAGGGAUGGAGCAGAGCAUGG - 31
Evidence experimental
Illumina [3]

Mature bdi-miR408-3p

Accession MIMAT0027039
Description Brachypodium distachyon bdi-miR408-3p mature miRNA
Sequence 117 - CUGCACUGCCUCUUCCCUGGC - 137
Evidence experimental
Illumina [3]

References

  1. PubMed ID: 21371551
    Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs
    "Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G"
    "Genomics (2011) 97:282-293

  2. PubMed ID: 21352554
    Discovery of barley miRNAs through deep sequencing of short reads
    Schreiber AW, Shi BJ, Huang CY, Langridge P, Baumann U
    BMC Genomics (2011) 12:129

  3. PubMed ID: 23264558
    Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
    "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
    "Mol Plant (2013) 6:423-443