miRBase entry: bdi-MIR5061

Stem-loop bdi-MIR5061


Accession
MI0017954
Description
Brachypodium distachyon bdi-MIR5061 precursor miRNA


Sequence

aggauaccggugaccgagugagagagagagauagcaaucaucgcauggcgcugggaagcaaucacacauaguuucuccgguccauuguaUCUGUUCUGUCCUGCUCGGUAccaaauugua
........((((.(((((((.((.(((((((((.((........((((.((((((((((...........))))).)))))))))))))))).)))).)).)))))))))))........

Structure
aggauacc    a       a  g    -     g  aucaucgc    c     -     aauc 
        ggug ccgagug ga agag agaua ca        augg gcugg gaagc    a
        |||| ||||||| || |||| ||||| ||        |||| ||||| |||||    c
        ccAU GGCUCGU CU UCUU UCUau gu        uacc uggcc cuuug    a
auguuaaa    -       C  G    G     -  --------    -     u     auac 


Annotation confidence Not enough data
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Comments
This is a predicted homolog of a miRNA identified by Illumina deep sequencing in barley (Hordeum vulgare) [1].

Genome context
1: 61734973-61735092 [+]

Database links

Mature bdi-miR5061

Accession MIMAT0020563
Description Brachypodium distachyon bdi-miR5061 mature miRNA
Sequence 90 - UCUGUUCUGUCCUGCUCGGUA - 110
Evidence not_experimental

References

  1. PubMed ID: 21352554
    Discovery of barley miRNAs through deep sequencing of short reads
    Schreiber AW, Shi BJ, Huang CY, Langridge P, Baumann U
    BMC Genomics (2011) 12:129