miRBase entry: osa-MIR5076

Stem-loop osa-MIR5076


Accession
MI0017955
Description
Oryza sativa osa-MIR5076 precursor miRNA

Literature search
1 open access papers mention osa-MIR5076
(4 sentences)

Sequence

12 reads, 17 reads per million, 2 experiments
caucugaucccagccuucuauugcuuuauuuucagucaauucaucuacuuguguaagaagaguagaguuugaguaucuagcaggguugaguauacauuugccaaauaauuuugcuguuauugaacuuaucuauauuuauacuaugccaaugaauucgaauuuuugaccuuuucucuccagcaugacucucuugacucGAAAUGGGAGCAGAGCAGGUUUgaaaaaagau
.((((......(((((.((.(((((((..((((((((((....((...(((.(..(((((((.(((((((((((.((..(((((..((((((((.((..(...((((((......))))))...)..)).))))))))..)).)))....)))))))))))))....)))))))..))))...)).....)))))).))))..))))))))).))))).......))))

Structure
c    -gauccc     u  a       au    -      -uuca  uac   u ua       ---u           a  --ua   -  gu        c  uu cca      uu 
 aucu       agccu cu uugcuuu  uuuc agucaa     uc   uug g  agaagag    agaguuugagu uc    gca gg  ugaguaua au  g   aauaau  u
 ||||       ||||| || |||||||  |||| ||||||     ||   ||| |  |||||||    ||||||||||| ||    ||| ||  |||||||| ||  |   ||||||   
 uaga       UUGGA GA GACGAGG  AAAG ucaguu     ag   gac c  ucuuuuc    uuuuaagcuua ag    cgu uc  auuuauau ua  c   uuauug  g
-    aaaaagU     C  -       GU    c      cucuc  uac   - uc       cagu           -  uaac   a  au        c  uu aag      uc 


Annotation confidence Not enough data
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Comments
This is a predicted homolog of a miRNA identified by Illumina deep sequencing in barley (Hordeum vulgare) [1].

Genome context
Chr1: 43208622-43208850 [-]

Database links

Mature osa-miR5076

Accession MIMAT0020564
Description Oryza sativa osa-miR5076 mature miRNA
Sequence 198 - GAAAUGGGAGCAGAGCAGGUUU - 219
Evidence not_experimental
Database links

References

  1. PubMed ID: 21352554
    Discovery of barley miRNAs through deep sequencing of short reads
    Schreiber AW, Shi BJ, Huang CY, Langridge P, Baumann U
    BMC Genomics (2011) 12:129