miRBase entry: tae-MIR5084

Stem-loop tae-MIR5084


Accession
MI0017957
Description
Triticum aestivum tae-MIR5084 precursor miRNA
Gene family
MIPF0002026; MIR5084

Literature search
1 open access papers mention tae-MIR5084
(1 sentences)

Sequence

1867 reads, 71 reads per million, 116 experiments
aaaaaagggguuuagauccucugcaguaccguauggugcuguaguauggauaacauguggggccaggucucaccuggcagugacuguacaacaucAUACAGUACUGCAGAGGAUCCUAAccccuuaaaa
....((((((((..(((((((((((((((.((((((((.(((..........(((.((.(.(((((((...)))))))..).)))))))).)))))))).)))))))))))))))..))))))))....

Structure
aaaa        ua               c        c   aguauggaua   u  g -g       c 
    aagggguu  gauccucugcaguac guauggug ugu          aca gu g  gccaggu  
    ||||||||  ||||||||||||||| |||||||| |||          ||| || |  ||||||| u
    uuccccAA  CUAGGAGACGUCAUG CAUAcuac aca          ugu ca u  cggucca  
aaaa        UC               A        a   ----------   -  g ga       c 


Annotation confidence Low
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Comments
This is a predicted homolog of a miRNA identified by Illumina deep sequencing in barley (Hordeum vulgare) [1].

Genome context
1A: 219935406-219935534 [+]

Database links

Mature tae-miR5084

Accession MIMAT0020566
Description Triticum aestivum tae-miR5084 mature miRNA
Sequence 96 - AUACAGUACUGCAGAGGAUCCUAA - 119
Evidence not_experimental

References

  1. PubMed ID: 21352554
    Discovery of barley miRNAs through deep sequencing of short reads
    Schreiber AW, Shi BJ, Huang CY, Langridge P, Baumann U
    BMC Genomics (2011) 12:129