miRBase entry: bdi-MIR5065

Stem-loop bdi-MIR5065


Accession
MI0017963
Description
Brachypodium distachyon bdi-MIR5065 precursor miRNA


Sequence

ugaaaaaggcUAGGCAAUUCACUUAUACACUaugauauucagaacuagcaguguacaagacaaauugaaucgugauuuaaauaugcaguccuauaaaauuaggacuaaauugacacccuagaacucuaguucuuucucguuccuuguuuugcuucaucauuuuuguuaguguaguucucugccaguuucau
(((((..(((.(((.((((((((.(((....(((((.....((...(((((...(((((.....((((((....))))))......(((((((......))))))).....(((.....(((((....))))).....))).))))).))))))))))))...))).)))).)))).))))))..))))).

Structure
-     aa   U   C    -    U   CACU     auuca  acu     ugu     acaaauugaaucgugauuuaaauaugcaguccuauaaaauuaggacuaaauu   acccu     u 
 ugaaa  ggc AGG AAUU CACU AUA    augau     ga   agcag   acaag                                                    gac     agaac c
 |||||  ||| ||| |||| |||| |||    |||||     ||   |||||   |||||                                                    |||     |||||  
 acuuu  ccg ucu uuga guga ugu    uacua     cu   ucguu   uguuc                                                    uug     ucuug u
u     ga   -   c    u    u   -uuu     -----  ---     --u     ---------------------------------------------------c   cucuu     a 


Annotation confidence Not enough data
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Comments
This is a predicted homolog of a miRNA identified by Illumina deep sequencing in barley (Hordeum vulgare) [1].

Genome context
3: 59067940-59068130 [-]

Database links

Mature bdi-miR5065

Accession MIMAT0020572
Description Brachypodium distachyon bdi-miR5065 mature miRNA
Sequence 11 - UAGGCAAUUCACUUAUACACU - 31
Evidence not_experimental

References

  1. PubMed ID: 21352554
    Discovery of barley miRNAs through deep sequencing of short reads
    Schreiber AW, Shi BJ, Huang CY, Langridge P, Baumann U
    BMC Genomics (2011) 12:129