miRBase entry: osa-MIR5077

Stem-loop osa-MIR5077


Accession
MI0017965
Description
Oryza sativa osa-MIR5077 precursor miRNA

Literature search
2 open access papers mention osa-MIR5077
(2 sentences)

Sequence

ugccuuuucguuGUUCGCGUCGGGUUCACCAgcuaggugguucgccaugaaguacaggaagggggucgccggcgaguccaacgaugacgac
.......((((((..(.((((((((((.((..((..(((.(((.....))).))).))..))))).).)))))).)..)))))).......

Structure
ugccuuu      UU G      - -   A  Ag  ag   g   g 
       ucguuG  C CGUCGG G UUC CC  cu  gug uuc c
       ||||||  | |||||| | ||| ||  ||  ||| ||| c
       agcaac  g gcggcc c ggg gg  gg  cau aag a
cagcagu      cu a      g u   -  aa  -a   g   u 


Annotation confidence Not enough data
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Comments
This is a predicted homolog of a miRNA identified by Illumina deep sequencing in barley (Hordeum vulgare) [1].

Genome context
Chr3: 14094752-14094842 [+]

Database links

Mature osa-miR5077

Accession MIMAT0020574
Description Oryza sativa osa-miR5077 mature miRNA
Sequence 13 - GUUCGCGUCGGGUUCACCA - 31
Evidence not_experimental

References

  1. PubMed ID: 21352554
    Discovery of barley miRNAs through deep sequencing of short reads
    Schreiber AW, Shi BJ, Huang CY, Langridge P, Baumann U
    BMC Genomics (2011) 12:129