miRBase entry: ssc-let-7a-2

Stem-loop ssc-let-7a-2


Accession
MI0017984
Description
Sus scrofa ssc-let-7a-2 precursor miRNA
Gene family
MIPF0000002; let-7

Literature search
49 open access papers mention ssc-let-7a-2
(160 sentences)

Sequence

1864 reads, 699 reads per million, 15 experiments
cacugugggaUGAGGUAGUAGGUUGUAUAGUUuuagggucacacccaccacugggagauaacuauacaaucuacugucuuuccuaacgugau
(((..(((((.(((((((((((((((((((((.....(((...((((....)))).)))))))))))))))))))))))))))))..)))..

Structure
--   ug     U                     uuagg   aca    c 
  cac  uggga GAGGUAGUAGGUUGUAUAGUU     guc   ccca c
  |||  ||||| |||||||||||||||||||||     |||   ||||  
  gug  auccu uucugucaucuaacauaucaa     uag   gggu a
ua   ca     -                     -----   --a    c 


Annotation confidence Not enough data
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Genome context
chr3: 44864433-44864524 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from ssc-let-7a-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ssc-let-7a

Accession MIMAT0013865
Description Sus scrofa ssc-let-7a mature miRNA
Sequence 11 - UGAGGUAGUAGGUUGUAUAGUU - 32
Evidence experimental
Illumina [1-2]

References

  1. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328

  2. PubMed ID: 24499489
    Exploration of microRNAs in porcine milk exosomes
    Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
    BMC Genomics (2014) 15:100