miRBase entry: ssc-mir-18b

Stem-loop ssc-mir-18b


Accession
MI0017985
Description
Sus scrofa ssc-mir-18b precursor miRNA
Gene family
MIPF0000001; mir-17

Literature search
10 open access papers mention ssc-mir-18b
(18 sentences)

Sequence

ucucuuguguUAAGGUGCAUCUAGUGCAGUUAGugaagcagcuuagaaucuacugcccuaaaugccccuucuggcacaggcug
...((((((((((((.((((.(((.(((((.((................))))))).))).)))).)))..)))))))))...

Structure
ucu         --   U    C   U     U  ugaagca 
   cuuguguUA  AGG GCAU UAG GCAGU AG       g
   |||||||||  ||| |||| ||| ||||| ||        
   ggacacggu  ucc cgua auc cguca uc       c
guc         cu   c    a   c     -  uaagauu 


Annotation confidence Not enough data
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Genome context
chrX: 126200019-126200101 [-]
Clustered miRNAs
5 other miRNAs are < 10 kb from ssc-mir-18b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ssc-miR-18b

Accession MIMAT0020585
Description Sus scrofa ssc-miR-18b mature miRNA
Sequence 11 - UAAGGUGCAUCUAGUGCAGUUAG - 33
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328