Stem-loop sequence ssc-mir-18b

Accession

MI0017985 (change log)

Description

Sus scrofa miR-18b stem-loop

Gene family

MIPF0000001; mir-17

Literature search

10 open access papers mention ssc-mir-18b
(18 sentences)

Stem-loop

   ucu         --   u    c   u     ua  --g     
5'    cuuguguua  agg gcau uag gcagu  gu   aagc 
      |||||||||  ||| |||| ||| |||||  ||   ||| a
3'    ggacacggu  ucc cgua auc cguca  ua   uucg 
   guc         cu   c    a   c     uc  aga     

Deep sequencing

428 reads, 33.3 reads per million, 15 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Sscrofa10.2; GCA_000003025.4): chrX: 126200019-126200101 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from ssc-mir-18b

• ssc-mir-106a: chrX: 126200183-126200263 [-]
• ssc-mir-18b: chrX: 126200019-126200101 [-]
• ssc-mir-20b-1: chrX: 126199775-126199854 [-]
• ssc-mir-19b-2: chrX: 126199650-126199729 [-]
• ssc-mir-92a-2: chrX: 126199512-126199591 [-]
• ssc-mir-363-1: chrX: 126199347-126199426 [-]

Database links

• EntrezGene:MIR18B
• miRBase Tracker:MI0017985

Mature sequence ssc-miR-18b

• Accession: MIMAT0020585
• Sequence: 11 - uaaggugcaucuagugcaguuag - 33
• Deep sequencing: 428 reads, 15 experiments
• Evidence: experimental; Illumina [1]

References

1. PMID:21312241 "MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing" Li G, Li Y, Li X, Ning X, Li M, Yang G J Cell Biochem. 112:1318-1328(2011).