Stem-loop sequence ssc-mir-219a

AccessionMI0017990 (change log)
Previous IDsssc-mir-219
DescriptionSus scrofa miR-219 stem-loop
Gene family MIPF0000044; mir-219
Literature search

4 open access papers mention ssc-mir-219a
(6 sentences)

Stem-loop 
   -c  -      uu   u     a  g         a   uau 
5'   cg cggcuc  gau gucca ac caauucucg guc   a
     || ||||||  ||| ||||| || ||||||||| |||   g
3'   gc gccgag  cug caggu ug guugagagc cgg   c
   cc  u      cc   -     c  a         -   ucu
Get sequence
Deep sequencing
13 reads, 0 reads per million, 8 experiments
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (Sscrofa10.2; GCA_000003025.4) Overlapping transcripts
chr7: 29752701-29752783 [-]
intergenic
Database links

Mature sequence ssc-miR-219a

Accession MIMAT0020590
Previous IDsssc-miR-219
Sequence

52 -  

agaguugagucuggacgucccg

 - 73

Get sequence
Deep sequencing3 reads, 3 experiments
Evidence experimental; Illumina [1-2]

References

1
PMID:21312241 "MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing" Li G, Li Y, Li X, Ning X, Li M, Yang G J Cell Biochem. 112:1318-1328(2011).
2
PMID:24499489 "Exploration of microRNAs in porcine milk exosomes" Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL BMC Genomics. 15:100(2014).