miRBase entry: ssc-mir-219a

Stem-loop ssc-mir-219a


Accession
MI0017990
Description
Sus scrofa ssc-mir-219a precursor miRNA
Gene family
MIPF0000044; mir-219

Literature search
4 open access papers mention ssc-mir-219a
(6 sentences)

Sequence

2 reads, 1 reads per million, 2 experiments
ccgcggcucuugauuguccaaacgcaauucucgagucuauagcucuggccgAGAGUUGAGUCUGGACGUCCCGagccgucgcc
.((((((((..(((.(((((.((.(((((((((.(((.........)))))))))))).)).))))))))..)))))).))..

Structure
-c  -      uu   u     a  g         a   uau 
  cg cggcuc  gau gucca ac caauucucg guc   a
  || ||||||  ||| ||||| || ||||||||| |||   g
  gc gccgaG  CUG CAGGU UG GUUGAGAgc cgg   c
cc  u      CC   -     C  A         -   ucu 


Annotation confidence Not enough data
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Genome context
chr7: 29752701-29752783 [-]

Database links

Mature ssc-miR-219a

Accession MIMAT0020590
Description Sus scrofa ssc-miR-219a mature miRNA
Sequence 52 - AGAGUUGAGUCUGGACGUCCCG - 73
Evidence experimental
Illumina [1-2]

References

  1. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328

  2. PubMed ID: 24499489
    Exploration of microRNAs in porcine milk exosomes
    Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
    BMC Genomics (2014) 15:100