miRBase entry: ssc-mir-486-2

Stem-loop ssc-mir-486-2


Accession
MI0017992
Description
Sus scrofa ssc-mir-486-2 precursor miRNA
Gene family
MIPF0000220; mir-486

Literature search
12 open access papers mention ssc-mir-486-2
(26 sentences)

Sequence

566 reads, 264 reads per million, 12 experiments
cccugacgggUCCUGUACUGAGCUGCCCCGAGgcccucacugugcccagcucgggccagcucaguacccggcgcgucggggu
((((((((.(((..(((((((((((.((((((((.(.....).)))....))))).)))))))))))..))).)))))))).

Structure
-        g   CU           C     ----   c u 
 cccugacg gUC  GUACUGAGCUG CCCGA    Ggc c c
 |||||||| |||  ||||||||||| |||||    ||| | a
 ggggcugc cgg  caugacucgac gggcu    ccg g c
u        g   cc           c     cgac   u u 


Annotation confidence Not enough data
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Genome context
chrUScaf2610: 3466-3547 [-]

Database links

Mature ssc-miR-486

Accession MIMAT0013886
Description Sus scrofa ssc-miR-486 mature miRNA
Sequence 11 - UCCUGUACUGAGCUGCCCCGAG - 32
Evidence experimental
Illumina [1-2]

References

  1. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328

  2. PubMed ID: 24499489
    Exploration of microRNAs in porcine milk exosomes
    Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
    BMC Genomics (2014) 15:100