miRBase entry: ssc-mir-545

Stem-loop ssc-mir-545


Accession
MI0017994
Description
Sus scrofa ssc-mir-545 precursor miRNA
Gene family
MIPF0000098; mir-95


Sequence

5 reads, 8 reads per million, 2 experiments
uuaguaggccUCAGUAAAUGUUUAUUGGAUGaauaaaugaaugacucAUCAACAAACAUUUAUUGUGUGccugcuaacg
((((((((((.((((((((((((....(((((.............)))))...)))))))))))).).)))))))))..

Structure
--         - U            AUUG     auaaa 
  uuaguaggc c CAGUAAAUGUUU    GAUGa     u
  ||||||||| | ||||||||||||    |||||     g
  aaucguccG G GUUAUUUACAAA    CUAcu     a
gc         U U            -CAA     cagua 


Annotation confidence Not enough data
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Genome context
chrX: 67530196-67530274 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ssc-mir-545
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ssc-miR-545-5p

Accession MIMAT0020593
Description Sus scrofa ssc-miR-545-5p mature miRNA
Sequence 11 - UCAGUAAAUGUUUAUUGGAUG - 31
Evidence experimental
Illumina [1]

Mature ssc-miR-545-3p

Accession MIMAT0020594
Description Sus scrofa ssc-miR-545-3p mature miRNA
Sequence 48 - AUCAACAAACAUUUAUUGUGUG - 69
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328