miRBase entry: ssc-mir-1343

Stem-loop ssc-mir-1343


Accession
MI0017996
Description
Sus scrofa ssc-mir-1343 precursor miRNA
Gene family
MIPF0001206; mir-1343

Literature search
4 open access papers mention ssc-mir-1343
(8 sentences)

Sequence

8 reads, 13 reads per million, 5 experiments
gcuucggugcuggggagcggcccccgggcgggccucugcucuggcccCUCCUGGGGCCCGCACUCUCGCuccggguccg
..(((((.((.((((.((((.(((((((.(((((........)))))..))))))).)))).)))).)).)))))....

Structure
--gc     u  u    a    c       -c     ucu 
    uucgg gc gggg gcgg ccccggg  gggcc   g
    ||||| || |||| |||| |||||||  |||||    
    gggcc CG UCUC CGCC GGGGUCC  cccgg   c
gccu     u  C    A    C       UC     ucu 


Annotation confidence Not enough data
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Genome context
chr2: 28433182-28433260 [-]

Database links

Mature ssc-miR-1343

Accession MIMAT0020596
Description Sus scrofa ssc-miR-1343 mature miRNA
Sequence 48 - CUCCUGGGGCCCGCACUCUCGC - 69
Evidence experimental
Illumina [1-2]

References

  1. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328

  2. PubMed ID: 24499489
    Exploration of microRNAs in porcine milk exosomes
    Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
    BMC Genomics (2014) 15:100