Stem-loop osa-MIR5143a

Accession

MI0018055

Description

Oryza sativa osa-MIR5143a precursor miRNA

Gene family

MIPF0001617; MIR5143

Literature search

2 open access papers mention osa-MIR5143a
(2 sentences)

Sequence

11 reads, 9 reads per million, 2 experiments

ccucauacuuccucauugaccaauauaccacaaaacacuacaauguuggccucuuuaccacuaucaagacacuucucccaguccauuuugucuguugagcaucaggacauuaauaaguguggagugccuugcucuacaucauccucuguaaacagucugggguugcaguuuuaUGUGGUAUGUUGGCAAUGUAGGAAgucugaaucgua
..(((.((((((((((((.(((((((((((((.((.(((.((((.((((.((.(((((........(((....)))....((((....((.((....))))...))))........(((((((((.....)))))))))........))))).)).)))).)))).))).)).)))))))))))))))))).))))))).)))......

Structure

----cc   u       -     a             a  c   a    g    c  c     cacuaucaagacacuucucccaguccauuuugucuguugagcaucaggacauuaauaa         g 
      uca acuuccu cauug ccaauauaccaca aa acu caau uugg cu uuuac                                                          guguggagu c
      ||| ||||||| ||||| ||||||||||||| || ||| |||| |||| || |||||                                                          ||||||||| c
      agu ugAAGGA GUAAC GGUUGUAUGGUGU uu uga guug gguc ga aaaug                                                          uacaucucg u
augcua   c       U     -             a  u   c    g    u  c     --------------------------------------------------ucuccuac         u 

Annotation confidence Not enough data

Genome context

Chr1: 8417107-8417315 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from osa-MIR5143a

Mature osa-miR5143a

• Accession: MIMAT0021087
• Description: Oryza sativa osa-miR5143a mature miRNA
• Sequence: 174 - UGUGGUAUGUUGGCAAUGUAGGAA - 197
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 21525786
   Genome-wide discovery and analysis of microRNAs and other small RNAs from rice embryogenic callus
   "Chen CJ, liu Q, Zhang YC, Qu LH, Chen YQ, Gautheret D"
   "RNA Biol (2011) 8:538-547


2. PubMed ID: 22158467
   Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage
   "Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ"
   "Plant Cell (2011) 23:4185-4207