Accession
MI0018056
Description
Oryza sativa
osa-MIR5144 precursor miRNA
Literature search
1 open access papers mention osa-MIR5144
(1 sentences)
(1 sentences)
Sequence
479
reads,
350
reads per million, 2 experiments
uccauauuauucUUCUUGUGCUGCUGAAGAGACucaccgaccuccggcggcgacgucuucuucuucccauugaaggucucggucuucuccuucagcuccugcggcaugggacgacgagguggagcucgaguccucgaggaacuugugccgcaugggacgcccaccaagaaagccccccucgucgccccgccaccgccaccgccgccgccgaacaaccaagagucugaaucugauucugauuccgaugacggccaaaaguccgauuccagugacgacgaggcgcugccggugccgaacccagcgcuucaggccaacaagaaugugccuccguccgaugaugaugaggaugacgaccaagaguccgauuccggugaugcccgaggucggugagUCUCCUCAGCAGCACAAGAAGaagaauaugga
((((((((.((((((((((((((((((.((((((((((((((((.(((((...((((.(((((.((.(((((..((..((((.(((........((....((((..((((.((((((((.((.((((((((((....)).))))).......((((...)))).......))).)))))))))).))))...))))....)).((((.((........((((((.......))))))........)).))))...))).))))..))...((((..(((((((((..(((.....))))))))))))((((((.......)).)))).)))))))))..)).))))).)))).))......(((....)))....))).)))))))))))))))).)))))))))))))))))).))))))))
((((((((.((((((((((((((((((.((((((((((((((((.(((((...((((.(((((.((.(((((..((..((((.(((........((....((((..((((.((((((((.((.((((((((((....)).))))).......((((...)))).......))).)))))))))).))))...))))....)).((((.((........((((((.......))))))........)).))))...))).))))..))...((((..(((((((((..(((.....))))))))))))((((((.......)).)))).)))))))))..)).))))).)))).))......(((....)))....))).)))))))))))))))).)))))))))))))))))).))))))))
Structure
a A c -------------------- cga u u -c ---------------------------------------------------------------aa uc u ---------------------------------------------cuccuuca uccu -ca a u a cgaguccucgaggaacuugug
uccauauu uucUUCUUGUGCUGCUGA GAGACucaccgaccuc ggc gg cguc ucuuc uc cauug gg ucgg cuu gc gcgg uggg cgacgagg gg gcu c
|||||||| |||||||||||||||||| |||||||||||||||| ||| || |||| ||||| || ||||| || |||| ||| || |||| |||| |||||||| || |||
agguauaa aaGAAGAACACGACGACU CUCUgaguggcuggag ccg cc gcag aggag ag guagc cc agcc gaa cg cgcc gccc gcugcucc cc cga c
g C c uaguggccuuagccugagaa --a u u ua cugccuccguguaagaacaaccggacuucgcgacccaagccguggccgucgcggagcagcaguga uu u aaccggcaguagccuuagucuuagucuaagucugagaaccaacaagccgccgc ccac acc c - c aagaaccacccgcaggguacg
Annotation confidence
Not enough data
Do you think this miRNA is real?
Genome context
Chr1: 25326388-25326810 [-]
Database links
Mature osa-miR5144-5p
| Accession | MIMAT0021088 |
| Description | Oryza sativa osa-miR5144-5p mature miRNA |
| Sequence | 13 - UUCUUGUGCUGCUGAAGAGAC - 33 |
| Evidence |
experimental
Illumina [1] |
| Database links |
|
Mature osa-miR5144-3p
| Accession | MIMAT0021089 |
| Description | Oryza sativa osa-miR5144-3p mature miRNA |
| Sequence | 392 - UCUCCUCAGCAGCACAAGAAG - 412 |
| Evidence |
experimental
Illumina [1] |
| Database links |
|
References
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