Stem-loop osa-MIR5162

Accession

MI0018078

Description

Oryza sativa osa-MIR5162 precursor miRNA

Literature search

1 open access papers mention osa-MIR5162
(1 sentences)

Sequence

3 reads, 0 reads per million, 2 experiments

ucauuuuuguccAAAUGACCAAAAUACCCCUAGAACaaaaauuuccgaaauuuggauaaaauuaucaaaauaucauauuauuaacauaagcuuguaagcauccaaaauuuggccaaaaacuuaaaaucugacauuucagaauuuuugucccagggguauuuuggucauuuugacaaauuugu
.((..((((((.(((((((((((((((((((.(.((((((((..(((((.(((((((...........((((......)))).......(((....)))))))))).)))))..............(((((....))))))))))))).).))))))))))))))))))).))))))..)).

Structure

u  uu      c                   A A        --------------------------uu     a       aaaauuaucaaaauaucaua 
 ca  uuuguc AAAUGACCAAAAUACCCCU G ACaaaaau                            ccgaa uuuggau                    u
 ||  |||||| ||||||||||||||||||| | ||||||||                            ||||| |||||||                     
 gu  aaacag uuuacugguuuuaugggga c uguuuuua                            gguuu aaaccua                    u
u  uu      u                   c c        agacuuuacagucuaaaauucaaaaacc     a       cgaauguucgaauacaauua 

Annotation confidence Not enough data

Genome context

Chr12: 16421196-16421377 [+]

Mature osa-miR5162

• Accession: MIMAT0021115
• Description: Oryza sativa osa-miR5162 mature miRNA
• Sequence: 13 - AAAUGACCAAAAUACCCCUAGAAC - 36
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21525786
   Genome-wide discovery and analysis of microRNAs and other small RNAs from rice embryogenic callus
   "Chen CJ, liu Q, Zhang YC, Qu LH, Chen YQ, Gautheret D"
   "RNA Biol (2011) 8:538-547