Stem-loop bdi-MIR169i

Accession

MI0018080

Description

Brachypodium distachyon bdi-MIR169i precursor miRNA

Gene family

MIPF0000832; MIR169_5

Literature search

3 open access papers mention bdi-MIR169i
(27 sentences)

Sequence

uggagacgaggagccccuuugcaggcucuaCCAGCCAAGAAUGGCUUGCCUAugcccacguucuguuucaucaccacugggcuuaaucuuggagcccuggugauggaugagaugugauuguauggucaagccaucuuggcuagaagagagauccucgucccccaugcuaggcugc
.((.((((((((...(((....)))((((.(.((((((((.(((((((.((((((.(((((.((..((((((((((..((((((.......))))))))))))))))..)))))))...)))))).))))))))))))))).).))))...)))))))).))...((......))

Structure

------------u  a        gccccuuugcagg    a C        A       C      --c     u  gu          cu      aa 
             gg gacgagga             cucu C AGCCAAGA UGGCUUG CUAugc   cacgu cu  uucaucacca  gggcuu  u
             || ||||||||             |||| | |||||||| ||||||| ||||||   ||||| ||  ||||||||||  ||||||  c
             cc cugcuccu             gaga g ucgguucu accgaac gguaug   gugua ga  agguaguggu  cccgag  u
cgucggaucguac  c        ----------aga    a a        -       u      uua     -  gu          --      gu 

Annotation confidence Not enough data

Genome context

4: 44509037-44509211 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from bdi-MIR169i

Mature bdi-miR169i

• Accession: MIMAT0020655
• Description: Brachypodium distachyon bdi-miR169i mature miRNA
• Sequence: 31 - CCAGCCAAGAAUGGCUUGCCUA - 52
• Evidence: not_experimental

References

1. PubMed ID: 21371551
   Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs
   "Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G"
   "Genomics (2011) 97:282-293