miRBase entry: bdi-MIR169j

Stem-loop bdi-MIR169j


Accession
MI0018082
Description
Brachypodium distachyon bdi-MIR169j precursor miRNA
Gene family
MIPF0000832; MIR169_5

Literature search
3 open access papers mention bdi-MIR169j
(27 sentences)

Sequence

cuuacauggagauaaggagccuaccucuguUAGCCAGGAAUGGCUUGCCUAcgcacacauuuuucgguucaucacaggggcaaaacuaacuuggagauagccccuaguaugauggacggaguguggcugcaUGGUCAAGCCUUCCUGACUAGGagagugcuccucaucccccaugcuaggcug
(((((((((.(((.((((((....((((.((((.((((((.((((((.(((.(((..(((..(((.(((((((((((((((..................)))))).))..))))))).))).)))..))).))).)))))))))))).)))).)))).)))))).)))..))))).))))...

Structure
---    -     -a   a      cuac    g    C      U      C   c   ca   uu   g       --  -      aaaacuaa 
   cuua caugg  gau aggagc    cucu uUAG CAGGAA GGCUUG CUA gca  cau  uuc guucauc  ac aggggc        c
   |||| |||||  ||| ||||||    |||| |||| |||||| |||||| ||| |||  |||  ||| |||||||  || ||||||         
   ggau guacc  cua uccucg    gaga GAUC GUCCUU CCGAAC GGU cgu  gug  gag cagguag  ug uccccg        u
guc    c     cc   c      ---u    G    A      -      U   a   cg   -u   g       ua  a      auagaggu 


Annotation confidence Not enough data
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Genome context
4: 44513754-44513936 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from bdi-MIR169j
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bdi-miR169j-5p

Accession MIMAT0020657
Description Brachypodium distachyon bdi-miR169j-5p mature miRNA
Sequence 31 - UAGCCAGGAAUGGCUUGCCUA - 51
Evidence experimental
Illumina [2]

Mature bdi-miR169j-3p

Accession MIMAT0027042
Description Brachypodium distachyon bdi-miR169j-3p mature miRNA
Sequence 132 - UGGUCAAGCCUUCCUGACUAGG - 153
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 21371551
    Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs
    "Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G"
    "Genomics (2011) 97:282-293

  2. PubMed ID: 23264558
    Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
    "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
    "Mol Plant (2013) 6:423-443