miRBase entry: bdi-MIR160a

Stem-loop bdi-MIR160a


Accession
MI0018086
Description
Brachypodium distachyon bdi-MIR160a precursor miRNA
Gene family
MIPF0000032; MIR160

Literature search
2 open access papers mention bdi-MIR160a
(6 sentences)

Sequence

ugcggaaggaggugaaaaaaaaaaugggauaUGCCUGGCUCCCUGUAUGCCAcucgcguagcugccaacaacucaguuugagcucccccggcccaaacgcaaacguuggcucuaccgcggaugGCGUGCGAGGAGCCAAGCAUGaccgucucucccccucccucccucucucccu
...(((.(((((.((........((((..(((((.(((((((.(((((((((.((((((((..((((((......(((((.(((.....))).)))))......)))))).))).))))).))))))))).))))))).))))).)))).........))))))).)))......

Structure
---ugc   a     u  -aaaaaaaa    ga     C       C         c     -   cu      aacuca     a   c 
      gga ggagg ga         augg  uaUGC UGGCUCC UGUAUGCCA ucgcg uag  gccaac      guuug gcu c
      ||| ||||| ||         ||||  ||||| ||||||| ||||||||| ||||| |||  ||||||      ||||| ||| c
      ucu ccucc cu         ugcc  GUACG ACCGAGG GCGUGCGgu ggcgc auc  cgguug      caaac cgg c
ucccuc   c     -  cccccucuc    -a     A       A         a     c   -u      caaacg     c   c 


Annotation confidence Not enough data
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Genome context
1: 4550703-4550877 [-]

Database links

Mature bdi-miR160a-5p

Accession MIMAT0020661
Description Brachypodium distachyon bdi-miR160a-5p mature miRNA
Sequence 32 - UGCCUGGCUCCCUGUAUGCCA - 52
Evidence experimental
Illumina [2]

Mature bdi-miR160a-3p

Accession MIMAT0027044
Description Brachypodium distachyon bdi-miR160a-3p mature miRNA
Sequence 124 - GCGUGCGAGGAGCCAAGCAUG - 144
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 21371551
    Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs
    "Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G"
    "Genomics (2011) 97:282-293

  2. PubMed ID: 23264558
    Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
    "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
    "Mol Plant (2013) 6:423-443