Stem-loop bdi-MIR160b

Accession

MI0018093

Description

Brachypodium distachyon bdi-MIR160b precursor miRNA

Gene family

MIPF0000032; MIR160

Literature search

2 open access papers mention bdi-MIR160b
(5 sentences)

Sequence

ucgauccgaauuaaucgaucaucggcugcgUGCCUGGCUCCCUGUAUGCCAcacauguagcccgauccgugccgagguuggaugcugugggugGCGUGCAAGGAGCCAAGCAUGcauacauacaagcuccaugaucgauccaucca
.............(((((((((.((((((((((.(((((((.((((((((((.((((((..((((((((...)).)))))).))).))).)))))))))).))))))).)))))).........))))..))))))))).......

Structure

ucgauccgaauua         -c    ---------      C       C          a   -   gc      -  u 
             aucgaucau  ggcu         gcgUGC UGGCUCC UGUAUGCCAc cau gua  ccgauc cg  
             |||||||||  ||||         |||||| ||||||| |||||||||| ||| |||  |||||| || g
             uagcuagua  ucga         cGUACG ACCGAGG ACGUGCGgug gug cgu  gguugg gc  
------accuacc         cc    acauacaua      A       A          g   u   -a      a  c 

Annotation confidence Not enough data

Genome context

1: 28020411-28020556 [-]

Mature bdi-miR160b-5p

• Accession: MIMAT0020668
• Description: Brachypodium distachyon bdi-miR160b-5p mature miRNA
• Sequence: 31 - UGCCUGGCUCCCUGUAUGCCA - 51
• Evidence: experimental ; Illumina [2]

Mature bdi-miR160b-3p

• Accession: MIMAT0027049
• Description: Brachypodium distachyon bdi-miR160b-3p mature miRNA
• Sequence: 94 - GCGUGCAAGGAGCCAAGCAUG - 114
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 21371551
   Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs
   "Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G"
   "Genomics (2011) 97:282-293


2. PubMed ID: 23264558
   Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
   "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
   "Mol Plant (2013) 6:423-443