Stem-loop bdi-MIR167c

Accession

MI0018095

Description

Brachypodium distachyon bdi-MIR167c precursor miRNA

Literature search

3 open access papers mention bdi-MIR167c
(8 sentences)

Sequence

1737438 reads, 31575.0 reads per million, 21 experiments

uucacuugcuguggugcaucuucuaggagcUGAAGCUGCCAGCAUGAUCUGACgagaguuccucgucugauagcaauguuuaauucucuugucaugacuaaugaucaGAUCAUGCUGUGCAGUUUCAUCUGcuuguggaugcacaagauacuguucaua
..(((.....)))((((((((.(.((.((.(((((((((((((((((((((..(((((((...(((.((....)))))...)))))))..(((((.....))))))))))))))))).))))))))).)).)).).))))))))...............

Structure

--uucacuugcugug        u u  g  c         -            ---------------AC       ccu   c  a 
               gugcaucu c ag ag UGAAGCUGC CAGCAUGAUCUG                 gagaguu   cgu ug u
               |||||||| | || || ||||||||| ||||||||||||                 |||||||   ||| ||  
               cacguagg g uc UC ACUUUGACG GUCGUACUAGac                 cucuuaa   gua ac a
auacuugucauagaa        u u  G  U         U            uaguaaucaguacuguu       uuu   -  g 

Annotation confidence High

Genome context

1: 54067075-54067233 [+]

Mature bdi-miR167c-5p

• Accession: MIMAT0020670
• Description: Brachypodium distachyon bdi-miR167c-5p mature miRNA
• Sequence: 31 - UGAAGCUGCCAGCAUGAUCUGAC - 53
• Evidence: experimental ; Illumina [2]

Mature bdi-miR167c-3p

• Accession: MIMAT0027050
• Description: Brachypodium distachyon bdi-miR167c-3p mature miRNA
• Sequence: 108 - GAUCAUGCUGUGCAGUUUCAUCUG - 131
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 21371551
   Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs
   "Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G"
   "Genomics (2011) 97:282-293


2. PubMed ID: 23264558
   Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
   "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
   "Mol Plant (2013) 6:423-443