miRBase entry: bdi-MIR160c

Stem-loop bdi-MIR160c


Accession
MI0018100
Description
Brachypodium distachyon bdi-MIR160c precursor miRNA
Gene family
MIPF0000032; MIR160

Literature search
2 open access papers mention bdi-MIR160c
(5 sentences)

Sequence

uaaauugaugaucugaucaagacugugcugUGCCUGGCUCCCUGUAUGCCAcacauguagcccagcccaugaaugugguuugccugcugugggugGCGUGCAAGGAGCCAAGCAUGcauuacgcauuaugaucaauuaaucucugguu
...((((((((((((((.......((((.((((.(((((((.((((((((((.(((((((.(.((((((....)).)))).).)))).))).)))))))))).))))))).)))))))).....)))).)))).))))))........

Structure
-----uaa      -    -    caagacu    u    C       C          a   -    c c    -  u 
        auugau gauc ugau       gugc gUGC UGGCUCC UGUAUGCCAc cau guag c agcc ca g
        |||||| |||| ||||       |||| |||| ||||||| |||||||||| ||| |||| | |||| ||  
        uaauua cuag auua       uacG UACG ACCGAGG ACGUGCGgug gug cguc g uugg gu a
uuggucuc      a    u    --cgcau    -    A       A          g   u    c u    u  a 


Annotation confidence Not enough data
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Genome context
3: 3414575-3414722 [-]

Database links

Mature bdi-miR160c-5p

Accession MIMAT0020675
Description Brachypodium distachyon bdi-miR160c-5p mature miRNA
Sequence 31 - UGCCUGGCUCCCUGUAUGCCA - 51
Evidence experimental
Illumina [2]

Mature bdi-miR160c-3p

Accession MIMAT0027054
Description Brachypodium distachyon bdi-miR160c-3p mature miRNA
Sequence 96 - GCGUGCAAGGAGCCAAGCAUG - 116
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 21371551
    Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs
    "Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G"
    "Genomics (2011) 97:282-293

  2. PubMed ID: 23264558
    Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
    "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
    "Mol Plant (2013) 6:423-443