miRBase entry: bdi-MIR396c

Stem-loop bdi-MIR396c


Accession
MI0018101
Description
Brachypodium distachyon bdi-MIR396c precursor miRNA
Gene family
MIPF0000047; MIR396

Literature search
2 open access papers mention bdi-MIR396c
(4 sentences)

Sequence

cgguagcaaaucgcauggcccucucugugaucUUCCACAGCUUUCUUGAACUGcucggaucugccuaauuagaucacggcuuggguuugcacgagagggcaGUUCAAUAAAGCUGUGGGAAAuuucagagagaggccaauugaucggcacaua
..((.((..((((..((((((((((((.(((.((((((((((((.(((((((((((.((((((......))))))....((((........)))).))))))))))).)))))))))))).))).))))))).)))))..))))..))))...

Structure
-cg  a  aa    ca     -       u   c            C           --------------------g      cc 
   gu gc  aucg  uggcc cucucug gau UUCCACAGCUUU UUGAACUGcuc                     gaucug  u
   || ||  ||||  ||||| ||||||| ||| |||||||||||| |||||||||||                     ||||||   
   ca cg  uagu  accgg gagagac uuA AGGGUGUCGAAA AACUUGacggg                     cuagau  a
aua  -  gc    ua     a       u   A            U           agagcacguuuggguucggca      ua 


Annotation confidence Not enough data
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Genome context
3: 54968138-54968290 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from bdi-MIR396c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bdi-miR396c-5p

Accession MIMAT0020676
Description Brachypodium distachyon bdi-miR396c-5p mature miRNA
Sequence 33 - UUCCACAGCUUUCUUGAACUG - 53
Evidence experimental
Illumina [2]

Mature bdi-miR396c-3p

Accession MIMAT0027055
Description Brachypodium distachyon bdi-miR396c-3p mature miRNA
Sequence 102 - GUUCAAUAAAGCUGUGGGAAA - 122
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 21371551
    Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs
    "Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G"
    "Genomics (2011) 97:282-293

  2. PubMed ID: 23264558
    Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
    "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
    "Mol Plant (2013) 6:423-443