Stem-loop bdi-MIR160d

Accession

MI0018106

Description

Brachypodium distachyon bdi-MIR160d precursor miRNA

Literature search

2 open access papers mention bdi-MIR160d
(5 sentences)

Sequence

agagacgaaggugaagcuuauguugggaugUGCCUGGCUCCCUGUAUGCCAcucaucuauagcaacauuccuuccugaugagguugccuaggauggaugGCGUGCACGGAGCCAAGCAUAucccccuugaucccaaccgucucuucucau
(((((((..((.((...(((....(((((((((.(((((((.(((((((((.((((((...(((((.(((.........))))))))...)))))).))))))))).))))))).)))))))))...)))))))...)))))))......

Structure

------       -aa  u  agc   uguu         C       C         c      aua     a   cuu 
      agagacg   gg ga   uua    gggaugUGC UGGCUCC UGUAUGCCA ucaucu   gcaac uuc   c
      |||||||   || ||   |||    ||||||||| ||||||| ||||||||| ||||||   ||||| |||   c
      ucucugc   cc cu   agu    cccuAUACG ACCGAGG ACGUGCGgu gguagg   cguug gag   u
uacucu       caa  -  ---   -ucc         A       C         a      auc     -   uag 

Annotation confidence Low

Genome context

3: 12734293-12734442 [+]

Mature bdi-miR160d-5p

• Accession: MIMAT0020681
• Description: Brachypodium distachyon bdi-miR160d-5p mature miRNA
• Sequence: 31 - UGCCUGGCUCCCUGUAUGCCA - 51
• Evidence: experimental ; Illumina [2]

Mature bdi-miR160d-3p

• Accession: MIMAT0027058
• Description: Brachypodium distachyon bdi-miR160d-3p mature miRNA
• Sequence: 100 - GCGUGCACGGAGCCAAGCAUA - 120
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 21371551
   Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs
   "Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G"
   "Genomics (2011) 97:282-293


2. PubMed ID: 23264558
   Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
   "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
   "Mol Plant (2013) 6:423-443