miRBase entry: bdi-MIR156c

Stem-loop bdi-MIR156c


Accession
MI0018109
Description
Brachypodium distachyon bdi-MIR156c precursor miRNA
Gene family
MIPF0000008; MIR156

Literature search
5 open access papers mention bdi-MIR156c
(25 sentences)

Sequence

agcuccugguguugagagggccucgagagauUGACAGAAGAGAGUGAGCACacggcgugauguccggcauauguaugccgucgucgccgcgugcucacuccucuuucugucagccucuuucucuccggaguuuaucuugcauccag
.....(((((((.((((.(((((.(((((((((((((((((((((((((((.((((..((((..((((((....)))))).)))))))).))))))))).))).)))))))))......)))))).)).)))..))))))).))))

Structure
agcuc    -   u    -g   -  c      ------         -   -         a    gu    uc      a 
     cugg ugu gaga  ggc cu gagaga      uUGACAGAA GAG AGUGAGCAC cggc  gaug  cggcau u
     |||| ||| ||||  ||| || ||||||      ||||||||| ||| ||||||||| ||||  ||||  ||||||  
     gacc acg uucu  uug gg cucucu      gacugucuu cuc ucacucgug gccg  cugc  gccgua g
-----    u   -    au   a  c      uucucc         u   c         c    --    -u      u 


Annotation confidence Not enough data
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Genome context
3: 4336022-4336167 [-]

Database links

Mature bdi-miR156c

Accession MIMAT0020684
Description Brachypodium distachyon bdi-miR156c mature miRNA
Sequence 32 - UGACAGAAGAGAGUGAGCAC - 51
Evidence not_experimental

References

  1. PubMed ID: 21371551
    Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs
    "Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G"
    "Genomics (2011) 97:282-293