miRBase entry: bdi-MIR172a

Stem-loop bdi-MIR172a


Accession
MI0018110
Description
Brachypodium distachyon bdi-MIR172a precursor miRNA
Gene family
MIPF0000035; MIR172

Literature search
6 open access papers mention bdi-MIR172a
(17 sentences)

Sequence

aggcggcacgcacagucggcgcuugcagguGCAGCACCACCAAGAUUCACAucggguucuccagucguaauuaauuaacgaggaguacaaccaugaugAGAAUCUUGAUGAUGCUGCAUcggcaaccgcucgacuacucaucauaucgucaau
.(((((.......((((((((.((((.(((((((((.((.((((((((.(((((((((((((..((((.........))))))))...)))).))))).)))))))).)).))))))))).)))).))).)))))..........)))))...

Structure
--a     ---cacgcac     -   c    a         C  C        A     -    ---    ag    aau 
   ggcgg          agucg gcg uugc gguGCAGCA CA CAAGAUUC CAucg gguu   cucc  ucgu   u
   |||||          ||||| ||| |||| ||||||||| || |||||||| ||||| ||||   ||||  ||||   a
   cugcu          ucagc cgc aacg cUACGUCGU GU GUUCUAAG guagu ccaa   gagg  agca   a
uaa     auacuacuca     u   c    g         A  A        A     a    cau    --    auu 


Annotation confidence Not enough data
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Genome context
3: 55737301-55737453 [-]

Database links

Mature bdi-miR172a-3p

Accession MIMAT0020685
Description Brachypodium distachyon bdi-miR172a-3p mature miRNA
Sequence 99 - AGAAUCUUGAUGAUGCUGCAU - 119
Evidence experimental
Illumina [2]

Mature bdi-miR172a-5p

Accession MIMAT0027061
Description Brachypodium distachyon bdi-miR172a-5p mature miRNA
Sequence 31 - GCAGCACCACCAAGAUUCACA - 51
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 21371551
    Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs
    "Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G"
    "Genomics (2011) 97:282-293

  2. PubMed ID: 23264558
    Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
    "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
    "Mol Plant (2013) 6:423-443