Stem-loop bdi-MIR166e

Accession

MI0018112

Description

Brachypodium distachyon bdi-MIR166e precursor miRNA

Gene family

MIPF0000004; MIR166

Literature search

2 open access papers mention bdi-MIR166e
(16 sentences)

Sequence

gggauagcaaagggggagcuuuuuuacuuugaggGGAAUGUUGUCUGGCUCGAGGugcugagaucgagagaacuugaaauucgaucucuagauugauCUCGGACCAGGCUUCAUUCCCcucaaguaaagcucccguguggccugcgauucu
(((((.(((..(.((((((((...(((((.((((((((((..((((((.(((((((...(((((((((...........))))))))).......))))))).))))))..))))))))))))))))))))))).)......))).)))))

Structure

     a   ----aa g        uuu     u          UU      C       ----gcu         agaa 
gggau gca      g gggagcuu   uacuu gaggGGAAUG  GUCUGG UCGAGGu       gagaucgag    c
||||| |||      | ||||||||   ||||| ||||||||||  |||||| |||||||       |||||||||    u
ucuua cgu      u cccucgaa   augaa cucCCCUUAC  CGGACC GGCUCua       cucuagcuu    u
     g   ccggug g        ---     -          UU      A       guuagau         aaag 

Annotation confidence Not enough data

Genome context

3: 51437868-51438018 [+]

Mature bdi-miR166e-3p

• Accession: MIMAT0020687
• Description: Brachypodium distachyon bdi-miR166e-3p mature miRNA
• Sequence: 98 - CUCGGACCAGGCUUCAUUCCC - 118
• Evidence: experimental ; Illumina [2]

Mature bdi-miR166e-5p

• Accession: MIMAT0027063
• Description: Brachypodium distachyon bdi-miR166e-5p mature miRNA
• Sequence: 35 - GGAAUGUUGUCUGGCUCGAGG - 55
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 21371551
   Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs
   "Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G"
   "Genomics (2011) 97:282-293


2. PubMed ID: 23264558
   Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
   "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
   "Mol Plant (2013) 6:423-443