miRBase entry: bdi-MIR166c

Stem-loop bdi-MIR166c


Accession
MI0018113
Description
Brachypodium distachyon bdi-MIR166c precursor miRNA
Gene family
MIPF0000004; MIR166

Literature search
2 open access papers mention bdi-MIR166c
(16 sentences)

Sequence

ugaagaugugaagcuauuuugcuucuggguGGAAUGUUGUCUGGUUCAAGGucuugccaugugauuugaggaugaacgguuugugcaugcauaacuuucauuucucuuguuugcgggaucUCGGACCAGGCUUCAUUCCCCucagagauagcuucaaacucgagaucuagcc
........((((((((((.....((((((.((((((..(((((((((.(((((((((.....(((..(((((((((.(((((((....))).)))))))).)))))..))).))))))))).)))))))))..)))))).))))))))))))))))................

Structure
--------ugaagaug          uugcu      u      UU         A         caugu   uu     -    c    -   g 
                ugaagcuauu     ucuggg GGAAUG  GUCUGGUUC AGGucuugc     gau  gagga ugaa gguu ugu c
                ||||||||||     |||||| ||||||  ||||||||| |||||||||     |||  ||||| |||| |||| |||  
                acuucgauag     agacuC CCUUAC  CGGACCAGG Ucuagggcg     uug  cucuu acuu ucaa acg a
ccgaucuagagcucaa          -----      C      UU         C         ----u   uu     u    -    u   u 


Annotation confidence Not enough data
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Genome context
3: 33098767-33098938 [+]

Database links

Mature bdi-miR166c-3p

Accession MIMAT0020688
Description Brachypodium distachyon bdi-miR166c-3p mature miRNA
Sequence 121 - UCGGACCAGGCUUCAUUCCCC - 141
Evidence experimental
Illumina [2]

Mature bdi-miR166c-5p

Accession MIMAT0027064
Description Brachypodium distachyon bdi-miR166c-5p mature miRNA
Sequence 31 - GGAAUGUUGUCUGGUUCAAGG - 51
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 21371551
    Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs
    "Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G"
    "Genomics (2011) 97:282-293

  2. PubMed ID: 23264558
    Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
    "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
    "Mol Plant (2013) 6:423-443