Stem-loop bdi-MIR169h

Accession

MI0018124

Description

Brachypodium distachyon bdi-MIR169h precursor miRNA

Gene family

MIPF0000012; MIR169_1

Literature search

3 open access papers mention bdi-MIR169h
(27 sentences)

Sequence

cuugcaugagggccagagccugcuuccuccggUAGCCAAGGAUGACUUGCCUAuauuugcuccuucagaaguccugguuaauuacaugccagguuucagaugaguuuggcgauaGGCAGUCACCUUGGCUAGCcugaguggcucuugccucuuauggaaggccu
(((.(((((((((.((((((......(((.(((((((((((.(((((.((((((....((((..((.((((.((((((.........)))))))))).)).))))......))))))))))))))))))).))).))).)))))).))).)))))).)))....

Structure

----   g      -   c      ugcuuc   c   -        A     U      --auuu    cu  a    u      uaa 
    cuu caugag ggc agagcc      cuc ggU AGCCAAGG UGACU GCCUAu      gcuc  uc gaag ccuggu   u
    ||| |||||| ||| ||||||      ||| ||| |||||||| ||||| ||||||      ||||  || |||| ||||||   u
    gaa guauuc ccg ucucgg      gag cCG UCGGUUCC ACUGA CGGaua      ugag  ag cuuu ggaccg   a
uccg   g      u   u      -----u   u   A        -     -      gcgguu    -u  a    -      uac 

Annotation confidence Not enough data

Genome context

5: 11563834-11563997 [-]

Mature bdi-miR169h-5p

• Accession: MIMAT0020699
• Description: Brachypodium distachyon bdi-miR169h-5p mature miRNA
• Sequence: 33 - UAGCCAAGGAUGACUUGCCUA - 53
• Evidence: experimental ; Illumina [2]

Mature bdi-miR169h-3p

• Accession: MIMAT0027071
• Description: Brachypodium distachyon bdi-miR169h-3p mature miRNA
• Sequence: 115 - GGCAGUCACCUUGGCUAGC - 133
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 21371551
   Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs
   "Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G"
   "Genomics (2011) 97:282-293


2. PubMed ID: 23264558
   Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
   "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
   "Mol Plant (2013) 6:423-443