Stem-loop bdi-MIR5164

Accession

MI0018131

Description

Brachypodium distachyon bdi-MIR5164 precursor miRNA

Gene family

MIPF0000382; MIR1122

Sequence

guauuaaaaacuaugcucuugggauaacuaguacucccuccgucccauaguuaguauCGCAACUUUGUCUAGAUACGCauguaccuacacacuaaaaagcgucuggauacaugcguaucuagacaaaauugugacacuuaauaugggacggggagggaguaacaaa
((((........))))..((((.....))))((((((((((((((((((...(((.((((((.((((((((((((((((((((.(((.((.((....)).)).))).)))))))))))))))))))).)))))).)))...))))))))..)))))))))).....

Structure

guauuaaaaacuaugcucuugggauaacuag          --        guu   a      C                    c   c  a  a 
                               uacucccucc  gucccaua   agu uCGCAA UUUGUCUAGAUACGCaugua cua ac cu a
                               ||||||||||  ||||||||   ||| |||||| |||||||||||||||||||| ||| || ||  
                               augagggagg  caggguau   uca aguguu aaacagaucuaugcguacau ggu ug ga a
--------------------------aaaca          gg        aau   c      a                    a   c  c  a 

Annotation confidence Not enough data

Genome context

4: 22543862-22544027 [-]

Mature bdi-miR5164

• Accession: MIMAT0020706
• Description: Brachypodium distachyon bdi-miR5164 mature miRNA
• Sequence: 58 - CGCAACUUUGUCUAGAUACGC - 78
• Evidence: not_experimental

References

1. PubMed ID: 21371551
   Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs
   "Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G"
   "Genomics (2011) 97:282-293