miRBase entry: bdi-MIR5175b

Stem-loop bdi-MIR5175b


Accession
MI0018146
Description
Brachypodium distachyon bdi-MIR5175b precursor miRNA
Gene family
MIPF0001200; MIR5067

Literature search
2 open access papers mention bdi-MIR5175b
(2 sentences)

Sequence

uccaaguugguguuugcgugauucagaacuacuuCCUCUGUUCCUAAAUUCUUGUcauuguuuuaguucaaauuuguauuaaagccacgacaagaauuuaggaauggagggaguaugagauaugcuacucccuuagcuuuu
...(((((((.((..(((((.((((....(((((((((((((((((((((((((((...((((((((.((....)).))))))))...))))))))))))))))))))))))))))))).))))).)).))...)))))..

Structure
ucc     ---  u  uu     a    gaac                           auu        u  a 
   aaguu   gg gu  gcgug uuca    uacuuCCUCUGUUCCUAAAUUCUUGUc   guuuuagu ca a
   |||||   || ||  ||||| ||||    |||||||||||||||||||||||||||   |||||||| ||  
   uucga   cc ca  cguau gagu    augagggagguaaggauuuaagaacag   cgaaauua gu u
-uu     uuc  u  -u     a    ----                           cac        u  u 


Annotation confidence Not enough data
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Genome context
3: 19465406-19465546 [+]

Database links

Mature bdi-miR5175b

Accession MIMAT0020722
Description Brachypodium distachyon bdi-miR5175b mature miRNA
Sequence 35 - CCUCUGUUCCUAAAUUCUUGU - 55
Evidence not_experimental

References

  1. PubMed ID: 21371551
    Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs
    "Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G"
    "Genomics (2011) 97:282-293