Stem-loop bdi-MIR5177

Accession

MI0018148

Description

Brachypodium distachyon bdi-MIR5177 precursor miRNA

Sequence

guccacuuuugagccacgaacguuaaaaucgucugaguugcacccgaacuaugaaaacugccuguuuuucaacuccaugugguuuuaaacaaguggguuugacugacaacgaugccguguauaugcuguaucacuaccauaacacuggcaugacaucaaacagaucagucucuucacuggaugcgcaugguucggguuaaaaccaugcuaaacucucacuacucauccuguuccucauugcccccucuguccucucucauuucugguauguuugacggugggccagagauguggcaaaccacuaugucagacgaaaccauuugugaaaccaucUGAGGUUGUAAAACAGACAGUucugacaguuaagagguugcaacucagacgguuuggggguucaggguugaaaguuug
....((((((((.((..((((.((.((((((((((((((((((((.((((.(.(.(((((.(((((((.(((((.((.((((((((..((((((((..(((.((((((...(((((((((.((((..(((....))))))))))).)))))((((((.....)))..))).....((.(((((.((((((((........))))))))...............))))).))..(((...((((...(((((......(((.......)))...))))).))))..)))..((((....))))..)))))).)))..)))))))))))))))).)).))))).))))))).))))).).).))))..).)).))))))))))))))))).)).)))).)).))))))))...

Structure

gucc        g  ac    g  a                 -  - -g    a g a     c       u     c  u        aa        gu   a      ------------------------------------------------------------------------------------------------------------------------------------------------------acg     -    a    cu   u 
    acuuuuga cc  gaac uu aaaucgucugaguugca cc c  aacu u a aacug cuguuuu caacu ca gugguuuu  acaagugg  uug cugaca                                                                                                                                                         augcc gugu uaug  gua c
    |||||||| ||  |||| || ||||||||||||||||| || |  |||| | | ||||| ||||||| ||||| || ||||||||  ||||||||  ||| ||||||                                                                                                                                                         ||||| |||| ||||  |||  
    ugaaaguu gg  cuug gg uuuggcagacucaacgu gg g  uuga a u uUGAC GACAAAA GUUGG GU uaccaaag  uguuuacc  agc gacugu                                                                                                                                                         uacgg caca auac  cau a
-guu        g  -a    g  g                 u  a aa    c g c     A       U     A  c        --        aa   a      aucaccaaacgguguagagaccggguggcaguuuguauggucuuuacucucuccugucucccccguuacuccuuguccuacucaucacucucaaaucguaccaaaauugggcuugguacgcguaggucacuucucugacuagacaaacuacag     u    -    --   c 

Annotation confidence Not enough data

Genome context

3: 9879796-9880206 [+]

Mature bdi-miR5177

• Accession: MIMAT0020724
• Description: Brachypodium distachyon bdi-miR5177 mature miRNA
• Sequence: 334 - UGAGGUUGUAAAACAGACAGU - 354
• Evidence: not_experimental

References

1. PubMed ID: 21371551
   Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs
   "Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G"
   "Genomics (2011) 97:282-293