miRBase entry: bdi-MIR5178

Stem-loop bdi-MIR5178


Accession
MI0018149
Description
Brachypodium distachyon bdi-MIR5178 precursor miRNA


Sequence

auuaggggcauuugauaggaaauuuaacugCUUGGGACCGCCGGUCAGAGCcauguggcagacaaaaugugacuaugauccaacucugacccauagcacaauauaucgaacuuaguccuugccacucgggcccaucgaucacgguuuuuuuuugccauauggcUCUGACCGGUGGGCCUGAGCGauuagauugccugucaaauauccuaaucuc
(((((((..((((((((((.(((((((.((((((((.(((((((((((((((((((((((((.((((((((.(((((...((....))...)))))))))....(((((.....((((.........))))...)))))......)))).))))))))))))))))))))))))).)))))))).))))))).)))))))))).)))))))...

Structure
---       gc          a       c        A                         c    ---------------------------------------------    a     auc  a 
   auuaggg  auuugauagg aauuuaa ugCUUGGG CCGCCGGUCAGAGCcauguggcaga aaaa                                             ugug cuaug   ca c
   |||||||  |||||||||| ||||||| |||||||| ||||||||||||||||||||||||| ||||                                             |||| |||||   ||  
   uaauccu  uaaacugucc uuagauu GCGAGUCC GGUGGCCAGUCUcgguauaccguuu uuuu                                             acac gauac   gu u
cuc       -a          g       a        G                         u    uggcacuagcuacccgggcucaccguuccugauucaagcuauaua    -     cca  c 


Annotation confidence Not enough data
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Genome context
3: 8463664-8463877 [-]

Database links

Mature bdi-miR5178-3p

Accession MIMAT0020725
Description Brachypodium distachyon bdi-miR5178-3p mature miRNA
Sequence 164 - UCUGACCGGUGGGCCUGAGCG - 184
Evidence experimental
Illumina [2]

Mature bdi-miR5178-5p

Accession MIMAT0027083
Description Brachypodium distachyon bdi-miR5178-5p mature miRNA
Sequence 31 - CUUGGGACCGCCGGUCAGAGC - 51
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 21371551
    Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs
    "Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G"
    "Genomics (2011) 97:282-293

  2. PubMed ID: 23264558
    Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
    "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
    "Mol Plant (2013) 6:423-443