Stem-loop bdi-MIR5179

Accession

MI0018151

Description

Brachypodium distachyon bdi-MIR5179 precursor miRNA

Gene family

MIPF0001641; MIR5179

Sequence

guugcuccuucaucccuagaucucucaugUUUUGCUCAAGACCGCGCAACaguuccauaugacaccgcaucgcuguccuugccuaucauauaucucaugaaguucgaccaauggaucuaaggaagaagaaaaagauugcaagcauguggaucauguaaaggauaggucugaacgucgaugcgcugguuauggucaggcugugcggucuugagcaauaacguugagacggaucucuuauucaagauauuuau
.......(((.......(((((((((((((((((((((((((((((((.(....(((((...((.(((((((.(((.(..(((((((........(((((...((.((.....(((((..............)))))........)).))))))).....)))))))..).))).))))))).))..)))))....).))))))))))))))))).)))).)))))..))))).......)))........

Structure

-guugcuc   caucccu     --     -    -                 A aguu     uga  c       c   c uu       auauaucu     agu  g  ---caaug     aaggaa 
        cuu       agauc  ucuca ugUU UUGCUCAAGACCGCGCA C    ccaua   ca cgcaucg ugu c  gccuauc        cauga   uc ac        gaucu      g
        |||       |||||  ||||| |||| ||||||||||||||||| |    |||||   || ||||||| ||| |  |||||||        |||||   || ||        |||||       
        gaa       ucuag  agagu gcaa aacgaguucuggcgugu g    gguau   gu gcguagc gca g  uggauag        guacu   ag ug        uuaga      a
uauuuaua   cuuauuc     gc     u    u                 c gacu     -ug  c       u   a uc       ---gaaau     ---  g  uacgaacg     aaaaga 

Annotation confidence Not enough data

Genome context

3: 9493263-9493513 [-]

Mature bdi-miR5179

• Accession: MIMAT0020727
• Description: Brachypodium distachyon bdi-miR5179 mature miRNA
• Sequence: 30 - UUUUGCUCAAGACCGCGCAAC - 50
• Evidence: not_experimental

References

1. PubMed ID: 21371551
   Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs
   "Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G"
   "Genomics (2011) 97:282-293