miRBase entry: bdi-MIR5182

Stem-loop bdi-MIR5182


Accession
MI0018155
Description
Brachypodium distachyon bdi-MIR5182 precursor miRNA


Sequence

aauaggcacccccuaagcauguauuaccuccguccggauuuauaaggcacguguguguuccaagaucaucgauguaacuagcaaaauaauucaaaaguucauuugacuacaaaucuaaugauguacuuuuuuguguaauauaauacauauuuuguugguuaaauUGAUGAUCUUGGAACACGUGCaugccuuauauauccguaccgagguacuac
..((((.....)))).....(((.((((((.((.(((((.(((((((((.(((((((((((((((((((((((.((((((((((((((....(((((((((((.((.......)).)))))...)))))).(((((......))))))))))))))))))).))))))))))))))))))))))).))))))))).))))).)).)))))).)))

Structure
aauaggcacccccuaagcau   u      c  c     u         c                       g              -------------auuc      ---     u  cu 
                    gua uaccuc gu cggau uauaaggca guguguguuccaagaucaucgau uaacuagcaaaaua                 aaaagu   ucauu ga  a
                    ||| |||||| || ||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||                 ||||||   ||||| ||  c
                    cau auggag ca gccua auauuccgu CGUGCACAAGGUUCUAGUAGUua auugguuguuuuau                 uuuuca   aguaa cu  a
--------------------   c      c  u     u         a                       a              acauaauauaauguguu      ugu     u  aa 


Annotation confidence Not enough data
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Genome context
2: 51090546-51090760 [-]

Database links

Mature bdi-miR5182

Accession MIMAT0020731
Description Brachypodium distachyon bdi-miR5182 mature miRNA
Sequence 165 - UGAUGAUCUUGGAACACGUGC - 185
Evidence not_experimental

References

  1. PubMed ID: 21371551
    Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs
    "Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G"
    "Genomics (2011) 97:282-293