Stem-loop bdi-MIR5184

Accession

MI0018157

Description

Brachypodium distachyon bdi-MIR5184 precursor miRNA

Sequence

cucuaaaauuucucaaaaacagaaucauagaugcgcaucauguuagaacacgugcgccugcaaaacaaucaugcaaaaagaucaaaugggcccugccaaaaauguauaaacaauucuacuuuuauuuuuuauuagugaagcuagaaccacuuguuauuuuaguacauggcacauuugaucauauuuucaugacuguuugcaggugcauaugUUCUAACAUUAUGCACAUCUAuguuuuuucugagaauuuuuuuacaugcaca
....((((.((((((.(((..(((.((((((((.((((.(((((((((((.(((((((((((((.((.(((((.((((.(((((((((.(((.((...((((((.((((....(((((.(((((((.......))))))).)))))....))))))))))....)).))).)))))))))...))))))))).))))))))))))))).))))))))))).)))).)))))))))))))).)))))).))))...........

Structure

-------cucu    u      a   ca   u        c    c           c             a  a     c    --a         g   c  -cca      u    acaa     c       uu 
           aaaa uucuca aaa  gaa cauagaug gcau auguuagaaca gugcgccugcaaa ca ucaug aaaa   gaucaaaug gcc ug    aaaaug auaa    uucua uuuuauu  u
           |||| |||||| |||  ||| |||||||| |||| ||||||||||| ||||||||||||| || ||||| ||||   ||||||||| ||| ||    |||||| ||||    ||||| |||||||  u
           uuuu aagagu uuu  uuu guAUCUAC CGUA UACAAUCUUgu uacguggacguuu gu aguac uuuu   cuaguuuac cgg ac    uuuuau uguu    aagau gaaguga  a
acacguacauu    u      c   --   -        A    U           a             -  c     -    aua         a   u  auga      -    cacc     c       uu 

Annotation confidence Not enough data

Genome context

2: 47213136-47213398 [-]

Mature bdi-miR5184

• Accession: MIMAT0020733
• Description: Brachypodium distachyon bdi-miR5184 mature miRNA
• Sequence: 212 - UUCUAACAUUAUGCACAUCUA - 232
• Evidence: not_experimental

References

1. PubMed ID: 21371551
   Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs
   "Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G"
   "Genomics (2011) 97:282-293